Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 3
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDX97099 | Canola | plastid | 76.95 | 77.26 |
CDX69764 | Canola | mitochondrion, plastid | 77.35 | 77.25 |
Bra008968.1-P | Field mustard | mitochondrion, plastid | 76.82 | 76.62 |
VIT_04s0008g04720.t01 | Wine grape | mitochondrion | 45.17 | 43.38 |
KRH16019 | Soybean | plastid | 46.09 | 40.85 |
AT3G18500.3 | Thale cress | nucleus | 23.44 | 39.42 |
Solyc08g067420.2.1 | Tomato | plastid | 43.71 | 37.8 |
AT1G73875.1 | Thale cress | nucleus | 22.38 | 37.22 |
GSMUA_Achr1P14560_001 | Banana | nucleus | 34.3 | 33.59 |
Zm00001d044447_P007 | Maize | mitochondrion | 23.58 | 31.12 |
KRH05096 | Soybean | cytosol | 20.66 | 30.59 |
EES03263 | Sorghum | mitochondrion | 34.17 | 29.59 |
TraesCS3B01G248600.1 | Wheat | mitochondrion | 35.76 | 29.48 |
TraesCS3D01G233900.2 | Wheat | mitochondrion | 35.63 | 29.37 |
Os01t0610600-01 | Rice | mitochondrion | 35.1 | 29.35 |
TraesCS3A01G218500.4 | Wheat | mitochondrion | 34.97 | 28.95 |
AT1G31530.1 | Thale cress | cytosol | 8.61 | 22.97 |
AT1G31500.7 | Thale cress | mitochondrion | 11.79 | 21.09 |
AT3G58580.1 | Thale cress | cytosol | 16.29 | 20.4 |
AT3G58560.1 | Thale cress | cytosol | 16.03 | 20.1 |
CDX97100 | Canola | plastid | 0.26 | 0.29 |
Protein Annotations
Gene3D:3.60.10.10 | MapMan:35.1 | EntrezGene:831006 | UniProt:A0A178UDZ2 | UniProt:A0A1P8BDV8 | ProteinID:ANM69795.1 |
ArrayExpress:AT5G11350 | EnsemblPlantsGene:AT5G11350 | RefSeq:AT5G11350 | TAIR:AT5G11350 | RefSeq:AT5G11350-TAIR-G | EnsemblPlants:AT5G11350.4 |
Unigene:At.27820 | InterPro:Endo/exonu/phosph_ase_sf | InterPro:Endo/exonuclease/phosphatase | InterPro:IPR036691 | RefSeq:NP_001331448.1 | ProteinID:OAO91998.1 |
PFAM:PF03372 | PANTHER:PTHR12121 | PANTHER:PTHR12121:SF48 | SUPFAM:SSF56219 | UniParc:UPI0007DED748 | SEG:seg |
Description
DNAse I-like superfamily protein [Source:TAIR;Acc:AT5G11350]
Coordinates
chr5:+:3621519..3625412
Molecular Weight (calculated)
85057.8 Da
IEP (calculated)
5.637
GRAVY (calculated)
-0.733
Length
755 amino acids
Sequence
(BLAST)
(BLAST)
001: MRRSRFVAQV FSDVTFADAS TISAPIFTMS TRAPQYRGAR GRGRGRGGRS FSDRPYNDDA GRDQFVTGDS HFQSVHDANF RFRHGEPYRQ HQPPLDQRQQ
101: PPFNQNYEFR PPPPSRGQWQ QFRQPNQFPS NQNYAACPPP PFYQNQMSRP PPQQSFRQRP RSKPSDYREW EYAKTPPSPG SEKFVVLSYN ILADYLANDH
201: WRSLYFHIPR NMLSWGWRKS KLVFELSLWS ADIMCLQEVD KFQDLEEEMK HRGYSAIWKM RTGNAVDGCA IFWRSNRFKL VHEESIQFNQ LGLRDNVAQI
301: CVLETLLTSH TKENETPPPE SSAGSHRVVI CNIHVLFNPK RGDFKLGQVR TLLDKAHAVS KLWDDAPIVL CGDFNCTPKS PLYNFISDRK LDLSGLARDK
401: VSGQVSAEFR PPRPENYTTR YQSANKSPQG QVQPPNLITN AHMENNSNID VGTAPSEKTS ELPCGDTILA GHEATSSSDQ VLPCENMASD CQFGIENRKP
501: DDSGNLSTAE DLSSLTISDT EPQHASSARE DLNTDRSVSS GLSETEQTPE EICSSDQDIS SSLSTKVDTF VAEMKLDGLK LDEPVVFAQD EESLGEDGET
601: FLAKLHDNNE NLSQKGELVS EVPLKWSSEA LNSDKITYSP SSWTPMEIAT ATGDPERTTV EHALELKSTY SEVEGQANTR DENGEPVVTS YHRCFMGTVD
701: YIWRSEGLQT VRVLAPIPKQ AMQWTPGFPT PKWGSDHIAL VSELAFCSSK TLPKS
101: PPFNQNYEFR PPPPSRGQWQ QFRQPNQFPS NQNYAACPPP PFYQNQMSRP PPQQSFRQRP RSKPSDYREW EYAKTPPSPG SEKFVVLSYN ILADYLANDH
201: WRSLYFHIPR NMLSWGWRKS KLVFELSLWS ADIMCLQEVD KFQDLEEEMK HRGYSAIWKM RTGNAVDGCA IFWRSNRFKL VHEESIQFNQ LGLRDNVAQI
301: CVLETLLTSH TKENETPPPE SSAGSHRVVI CNIHVLFNPK RGDFKLGQVR TLLDKAHAVS KLWDDAPIVL CGDFNCTPKS PLYNFISDRK LDLSGLARDK
401: VSGQVSAEFR PPRPENYTTR YQSANKSPQG QVQPPNLITN AHMENNSNID VGTAPSEKTS ELPCGDTILA GHEATSSSDQ VLPCENMASD CQFGIENRKP
501: DDSGNLSTAE DLSSLTISDT EPQHASSARE DLNTDRSVSS GLSETEQTPE EICSSDQDIS SSLSTKVDTF VAEMKLDGLK LDEPVVFAQD EESLGEDGET
601: FLAKLHDNNE NLSQKGELVS EVPLKWSSEA LNSDKITYSP SSWTPMEIAT ATGDPERTTV EHALELKSTY SEVEGQANTR DENGEPVVTS YHRCFMGTVD
701: YIWRSEGLQT VRVLAPIPKQ AMQWTPGFPT PKWGSDHIAL VSELAFCSSK TLPKS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.