Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96494 | Canola | plastid | 75.77 | 78.0 |
| CDX73024 | Canola | plastid | 77.31 | 77.31 |
| Bra015956.1-P | Field mustard | plastid | 75.99 | 75.82 |
| KRH48475 | Soybean | cytosol | 41.19 | 65.16 |
| KRH39200 | Soybean | nucleus, plastid | 54.19 | 57.48 |
| VIT_17s0000g03760.t01 | Wine grape | nucleus | 55.95 | 54.86 |
| Solyc03g119570.1.1 | Tomato | nucleus | 48.46 | 52.63 |
| PGSC0003DMT400014627 | Potato | nucleus | 46.92 | 47.97 |
| GSMUA_Achr6P09650_001 | Banana | nucleus | 44.71 | 43.01 |
| AT3G18500.3 | Thale cress | nucleus | 38.11 | 38.53 |
| AT1G31530.1 | Thale cress | cytosol | 14.54 | 23.32 |
| AT5G11350.4 | Thale cress | nucleus | 37.22 | 22.38 |
| AT1G31500.7 | Thale cress | mitochondrion | 19.16 | 20.62 |
| AT3G58560.1 | Thale cress | cytosol | 24.45 | 18.44 |
| AT3G58580.1 | Thale cress | cytosol | 23.79 | 17.91 |
Protein Annotations
| MapMan:35.1 | EntrezGene:843724 | EMBL:AC016662 | ProteinID:AEE35519.1 | EMBL:AK230427 | ArrayExpress:AT1G73875 |
| EnsemblPlantsGene:AT1G73875 | RefSeq:AT1G73875 | TAIR:AT1G73875 | RefSeq:AT1G73875-TAIR-G | EnsemblPlants:AT1G73875.1 | TAIR:AT1G73875.1 |
| Unigene:At.45165 | EMBL:BT010832 | EMBL:BT011303 | InterPro:Endo/exonu/phosph_ase_sf | InterPro:Endo/exonuclease/phosphatase | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004527 | GO:GO:0004535 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016787 | GO:GO:0046872 | GO:GO:0090305 | GO:GO:0090503 | InterPro:IPR036691 |
| RefSeq:NP_683491.2 | PFAM:PF03372 | PO:PO:0000293 | PANTHER:PTHR12121 | PANTHER:PTHR12121:SF51 | UniProt:Q0WKY2 |
| SUPFAM:SSF56219 | UniParc:UPI000034F53A | SEG:seg | : | : | : |
Description
CCR4-5Carbon catabolite repressor protein 4 homolog 5 [Source:UniProtKB/Swiss-Prot;Acc:Q0WKY2]
Coordinates
chr1:+:27780855..27784920
Molecular Weight (calculated)
52154.6 Da
IEP (calculated)
9.236
GRAVY (calculated)
-0.670
Length
454 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGYERKNTT ANSITITKRK RNSISEQSEN VYEKSNRKES ITLKPHRSFT PGFSQRDCKP VRHSKSSLRR RRRTKEKISS SVEREWVFSA NNFENLADKL
101: VLVSYNLLGV DNASNHMDLY YNVPRKHLEW SRRKHLICKE ISRYNASILC LQEVDRFDDL DVLLKNRGFR GVHKSRTGEA SDGCAIFWKE NLFELLDHQH
201: IEFDKFGMRN NVAQLCVLEM NCEEDPKSKL RVRSSDPRRL VVGNIHVLFN PKRGDIKLGQ VRLFLEKAYK LSQEWGNIPV AIAGDLNSTP QSAIYDFIAS
301: ADLDTQLHDR RQISGQTEVE PKERSFRNHY AFSASASISG SLLNEWSQEE LQLATGGQET THVQHQLKLN SAYSGVPGTY RTRDQRGEPL ATTYHSRFLG
401: TVDYIWHTKE LVPVRVLETL PADVLRRTGG LPSENWGSDH LAIACELGFV NDWQ
101: VLVSYNLLGV DNASNHMDLY YNVPRKHLEW SRRKHLICKE ISRYNASILC LQEVDRFDDL DVLLKNRGFR GVHKSRTGEA SDGCAIFWKE NLFELLDHQH
201: IEFDKFGMRN NVAQLCVLEM NCEEDPKSKL RVRSSDPRRL VVGNIHVLFN PKRGDIKLGQ VRLFLEKAYK LSQEWGNIPV AIAGDLNSTP QSAIYDFIAS
301: ADLDTQLHDR RQISGQTEVE PKERSFRNHY AFSASASISG SLLNEWSQEE LQLATGGQET THVQHQLKLN SAYSGVPGTY RTRDQRGEPL ATTYHSRFLG
401: TVDYIWHTKE LVPVRVLETL PADVLRRTGG LPSENWGSDH LAIACELGFV NDWQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.