CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH48475	Soybean	cytosol	60.75	90.59
VIT_17s0000g03760.t01	Wine grape	nucleus	62.38	57.67
CDX96494	Canola	plastid	56.78	55.1
Solyc03g119570.1.1	Tomato	nucleus	53.27	54.55
AT1G73875.1	Thale cress	nucleus	57.48	54.19
CDX73024	Canola	plastid	57.01	53.74
Bra015956.1-P	Field mustard	plastid	56.54	53.19
PGSC0003DMT400014627	Potato	nucleus	50.7	48.87
GSMUA_Achr6P09650_001	Banana	nucleus	51.87	47.03
KRH41616	Soybean	cytosol	36.22	42.23
KRH60320	Soybean	plastid	42.76	42.07
KRH71803	Soybean	cytosol	14.02	32.61
KRH39729	Soybean	plastid	21.96	24.04
KRH76418	Soybean	nucleus	15.89	23.45
KRH16019	Soybean	plastid	37.85	19.01
KRG96349	Soybean	cytosol	26.4	18.83
KRH68083	Soybean	cytosol	26.17	18.6
KRH38033	Soybean	cytosol	25.93	18.5
KRH05096	Soybean	cytosol	18.46	15.49
KRH71804	Soybean	cytosol	10.51	11.75

Protein Annotations

EMBL:ACUP02005924	EnsemblPlants:KRH39200	EnsemblPlantsGene:GLYMA_09G184700	EntrezGene:100777474	InterPro:Endo/exonu/phosph_ase_sf	InterPro:Endo/exonuclease/phosphatase
InterPro:IPR036691	PANTHER:PTHR12121	PANTHER:PTHR12121:SF51	PFAM:PF03372	ProteinID:KRH39200	ProteinID:KRH39200.1
ProteinID:KRH39201.1	SUPFAM:SSF56219	UniParc:UPI000295CE69	UniProt:K7M1Z8	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr9:+:40992586..40997519

Molecular Weight (calculated)

48352.4 Da

IEP (calculated)

6.969

GRAVY (calculated)

-0.355

Length

428 amino acids

Sequence
(BLAST)

001: MLPQPPSSIL ASSMAGHDCG SPPLENLSTC YLSKQRTPQL EAPVSDCGVC SRRWVFSLKD FSNCMDKVLV VSYNILGVEN ASNHPDLYSN IPHSFLEWDR
101: RKRLILEEIN NYNASILCFQ EVDHFNDLDD LFQNSGFKGV YKARTGEAQD GCAVFWKDKL FKLLHQEDIE FQRFGMRNNV AQLCVFEANH DKKESDACNL
201: TTMTPSTGKR RFVVGNIHVL FNPNRGDIKL GQVRLLLDKA YKLSQEWGNI PVIIAGDLNS VPQSAIYKFL SSSKLDIQLH DRRNMSGQLE IQTNRVFRSQ
301: IGDDASISMS VSRQLYRWSV EELRLASGAE GVTRLQHQLK LCSAYSGVPG NHRTRDDIGE PLATSYHSKF MGTVDYIWHS EDLIPVRVLE TLPIDTLRRS
401: RGLPSEKWGS DHLAVVCEFA FANNANVS

Best Arabidopsis Sequence Match ( AT1G73875.1 )
(BLAST)

001: MSGYERKNTT ANSITITKRK RNSISEQSEN VYEKSNRKES ITLKPHRSFT PGFSQRDCKP VRHSKSSLRR RRRTKEKISS SVEREWVFSA NNFENLADKL
101: VLVSYNLLGV DNASNHMDLY YNVPRKHLEW SRRKHLICKE ISRYNASILC LQEVDRFDDL DVLLKNRGFR GVHKSRTGEA SDGCAIFWKE NLFELLDHQH
201: IEFDKFGMRN NVAQLCVLEM NCEEDPKSKL RVRSSDPRRL VVGNIHVLFN PKRGDIKLGQ VRLFLEKAYK LSQEWGNIPV AIAGDLNSTP QSAIYDFIAS
301: ADLDTQLHDR RQISGQTEVE PKERSFRNHY AFSASASISG SLLNEWSQEE LQLATGGQET THVQHQLKLN SAYSGVPGTY RTRDQRGEPL ATTYHSRFLG
401: TVDYIWHTKE LVPVRVLETL PADVLRRTGG LPSENWGSDH LAIACELGFV NDWQ

Arabidopsis Description

CCR4-5Carbon catabolite repressor protein 4 homolog 5 [Source:UniProtKB/Swiss-Prot;Acc:Q0WKY2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.