CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03220
KRH04337
KRH28286
KRH57136
KRH58200
KRH77206

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58560.1	KRH04337	AT4G17950.1	21798944
AT3G58560.1	KRH28286	AT4G17950.1	21798944
AT3G58560.1	KRH58200	AT4G17950.1	21798944
AT3G58560.1	KRH77206	AT4G17950.1	21798944
AT3G58560.1	KRH03220	AT4G24690.1	21798944
AT3G58560.1	KRH57136	AT4G24690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96349	Soybean	cytosol	96.18	96.5
KRH71803	Soybean	cytosol	28.74	94.02
KRH38033	Soybean	cytosol	90.37	90.67
KRH71804	Soybean	cytosol	56.15	88.25
VIT_08s0007g07020.t01	Wine grape	cytosol	85.05	84.91
PGSC0003DMT400029795	Potato	cytosol	81.56	81.16
Solyc10g078950.1.1	Tomato	cytosol	74.75	80.21
AT3G58560.1	Thale cress	cytosol	78.41	78.41
CDX67751	Canola	cytosol	76.25	77.53
Solyc03g059010.2.1	Tomato	cytosol, nucleus, plastid	76.41	77.44
Bra003342.1-P	Field mustard	cytosol	76.08	77.36
CDX98303	Canola	cytosol	75.25	76.52
Bra014566.1-P	Field mustard	cytosol	76.25	76.5
CDY00572	Canola	cytosol	76.25	76.5
AT3G58580.1	Thale cress	cytosol	76.25	76.12
CDX88992	Canola	mitochondrion	69.77	75.81
CDX67753	Canola	cytosol	75.42	75.67
Bra003344.1-P	Field mustard	cytosol	71.93	75.57
Zm00001d032979_P003	Maize	cytosol	74.75	74.38
Os10t0412100-01	Rice	cytosol	74.75	74.38
Os03t0166800-01	Rice	cytosol	74.92	74.3
GSMUA_Achr9P25420_001	Banana	cytosol	71.93	74.27
OQU91798	Sorghum	cytosol	74.58	74.09
TraesCS1D01G134400.1	Wheat	cytosol	74.09	73.72
TraesCS1B01G153300.2	Wheat	cytosol	74.09	73.72
TraesCS1A01G137900.1	Wheat	cytosol	74.09	73.72
HORVU1Hr1G035390.1	Barley	cytosol	73.92	73.55
GSMUA_Achr4P17200_001	Banana	cytosol	71.26	73.46
GSMUA_Achr9P11040_001	Banana	cytosol, peroxisome, vacuole	70.27	73.31
Bra007403.1-P	Field mustard	cytosol	72.43	73.03
Zm00001d014187_P011	Maize	cytosol	73.09	72.97
CDX71943	Canola	cytosol	72.76	72.76
CDY49233	Canola	cytosol	72.26	72.5
KXG40109	Sorghum	mitochondrion	74.25	72.1
CDX98305	Canola	plastid	74.58	70.49
Zm00001d027811_P001	Maize	mitochondrion	74.09	69.25
GSMUA_Achr6P29710_001	Banana	endoplasmic reticulum, golgi	65.78	54.25
KRH48475	Soybean	cytosol	14.45	30.31
KRH41616	Soybean	cytosol	16.28	26.7
KRH39200	Soybean	nucleus, plastid	18.6	26.17
KRH39729	Soybean	plastid	16.94	26.09
KRH76418	Soybean	nucleus	12.29	25.52
KRH60320	Soybean	plastid	18.44	25.52
KRH16019	Soybean	plastid	19.44	13.73
KRH05096	Soybean	cytosol	9.3	10.98

Protein Annotations

EMBL:ACUP02002098	EnsemblPlants:KRH68083	EnsemblPlantsGene:GLYMA_03G207300	EntrezGene:100808935	Gene3D:3.60.10.10	InterPro:Endo/exonu/phosph_ase_sf
InterPro:Endo/exonuclease/phosphatase	InterPro:IPR036691	InterPro:Zfn-C6H2	MetaCyc:PWY-7799	MetaCyc:PWY-7800	PANTHER:PTHR12121
PANTHER:PTHR12121:SF29	PFAM:PF03372	PFAM:PF15801	ProteinID:KRH68083	ProteinID:KRH68083.1	ProteinID:KRH68084.1
SEG:seg	SUPFAM:SSF56219	UniParc:UPI0002339913	UniProt:I1JQF1	MapMan:16.8.2.1.2.1	:

Description

hypothetical protein

Coordinates

chr3:-:41473540..41479822

Molecular Weight (calculated)

66819.1 Da

IEP (calculated)

7.011

GRAVY (calculated)

-0.285

Length

602 amino acids

Sequence
(BLAST)

001: MLSVLRVHLP SDIPIVGCEL TPYVLLRRPD KTVTTDDFPE TAPLDGHFLR YKWYRVQSDK KVAVCSVHPS EQAALQCLGC VKAKIPVAKS YHCSPKCFSD
101: AWQHHRVLHD RAASAANENG NEEEELYGRF NNSGSGSGSI NTSLSSSASS ASLTNGSAPV YPAAVTQRSG GETWFEVGQF KTYTPTADDI GHVLKFECAV
201: VDSETKLAVG HVNTLLTSRV IPAPSPSPRR LIPVDGMGHL DADGRITSSG TFTVLSYNIL SDAYASNDLY NYCPSWALSW PYRRQNLLRE IVGYRADIIC
301: LQEVQSDHYE EFFSPELDKH GYYGLYKKKT NEVYNGNINT IDGCATFFRR DRFSHVKKYE VEFNKAAQSL TDAVIPTTQK KTALNRLVKD NVALIVVLEA
401: KVNNQPVDNP GKRQLLCVAN THVNVHHDLK DVKLWQVHTL LKGLEKIAAS ADIPMLVCGD FNSIPGSAPH ALLAMGKVDP SHPDLAVDPL NILRPHSKLV
501: HQLPLVSAYS SFARTVGLGF EQHKGRLDNA TNEPLFTNVT RDFIGSLDYI FYTADSLVVE SLLELLDEES LRKDTALPSP EWSSDHIAML AEFRCCKNRS
601: RR

Best Arabidopsis Sequence Match ( AT3G58560.1 )
(BLAST)

001: MLSVIRVHLP SEIPIVGCEL TPYVLLRRPD KTPSTDDVPE SAPLEGHFLK YRWFRVQSDK KVAICSVHPS ETATLQCLGC LKSKVPVAKS YHCSTKCFSD
101: AWQHHRVLHE RAASAATEGN DEEELPRLNS SGSGSGVLST SVSLTNGSSS VYPSAITQKT GAGGETLVEV GRSKTYTPMA DDICHVLKFE CVVVNAETKQ
201: NVGLSCTILT SRVIPAPSPS PRRLISISGT DVTGHLDSNG RPLSMGTFTV LSYNILSDTY ASSDIYSYCP TWALAWTYRR QNLLREIVKY RADIVCLQEV
301: QNDHFEEFFL PELDKHGYQG LFKRKTNEVF IGNTNTIDGC ATFFRRDRFS HVKKYEVEFN KAAQSLTEAI IPVSQKKNAL NRLVKDNVAL IVVLEAKFGS
401: QAADNPGKRQ LLCVANTHVN VPHELKDVKL WQVHTLLKGL EKIAASADIP MLVCGDFNTV PASAPHTLLA VGKVDPLHPD LMVDPLGILR PHSKLTHQLP
501: LVSAYSQFAK MGGNVITEQQ RRRLDPASSE PLFTNCTRDF IGTLDYIFYT ADTLTVESLL ELLDEESLRK DTALPSPEWS SDHIALLAEF RCMPRARRNN
601: IL

Arabidopsis Description

CCR4-1Carbon catabolite repressor protein 4 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W0Z9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.