Factsheet for GSMUA_Achr6P29710_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

plastid 2
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P09840_001
GSMUA_Achr4P27240_001
GSMUA_Achr5P03370_001
GSMUA_Achr9P01840_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58560.1	GSMUA_Achr2P09840_001	AT4G17950.1	21798944
AT3G58560.1	GSMUA_Achr4P27240_001	AT4G17950.1	21798944
AT3G58560.1	GSMUA_Achr5P03370_001	AT4G17950.1	21798944
AT3G58560.1	GSMUA_Achr9P01840_001	AT4G24690.1	21798944
AT3G58560.1	GSMUA_AchrUn_...	AT4G24690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P25420_001	Banana	cytosol	68.49	85.76
GSMUA_Achr9P11040_001	Banana	cytosol, peroxisome, vacuole	62.74	79.38
GSMUA_Achr4P17200_001	Banana	cytosol	60.96	76.2
Solyc10g078950.1.1	Tomato	cytosol	55.48	72.19
VIT_08s0007g07020.t01	Wine grape	cytosol	56.3	68.16
KRH71804	Soybean	cytosol	35.34	67.36
Os10t0412100-01	Rice	cytosol	55.62	67.11
Os03t0166800-01	Rice	cytosol	55.62	66.89
PGSC0003DMT400029795	Potato	cytosol	55.34	66.78
OQU91798	Sorghum	cytosol	55.07	66.34
KRG96349	Soybean	cytosol	54.38	66.17
KRH38033	Soybean	cytosol	54.25	66.0
TraesCS1D01G134400.1	Wheat	cytosol	54.66	65.95
TraesCS1B01G153300.2	Wheat	cytosol	54.66	65.95
TraesCS1A01G137900.1	Wheat	cytosol	54.66	65.95
HORVU1Hr1G035390.1	Barley	cytosol	54.66	65.95
Zm00001d032979_P003	Maize	cytosol	54.52	65.79
KRH68083	Soybean	cytosol	54.25	65.78
KXG40109	Sorghum	mitochondrion	55.75	65.65
Zm00001d014187_P011	Maize	cytosol	53.56	64.84
CDX67751	Canola	cytosol	52.47	64.7
Bra003342.1-P	Field mustard	cytosol	52.33	64.53
CDX98303	Canola	cytosol	52.05	64.19
AT3G58560.1	Thale cress	cytosol	52.74	63.95
Solyc03g059010.2.1	Tomato	cytosol, nucleus, plastid	51.51	63.3
CDY00572	Canola	cytosol	51.78	63.0
Zm00001d027811_P001	Maize	mitochondrion	55.48	62.89
Bra014566.1-P	Field mustard	cytosol	51.64	62.83
Bra007403.1-P	Field mustard	cytosol	51.23	62.65
AT3G58580.1	Thale cress	cytosol	51.64	62.52
CDY49233	Canola	cytosol	51.37	62.5
CDX67753	Canola	cytosol	51.23	62.33
CDX71943	Canola	cytosol	51.23	62.13
Bra003344.1-P	Field mustard	cytosol	48.49	61.78
CDX88992	Canola	mitochondrion	46.71	61.55
KRH71803	Soybean	cytosol	15.07	59.78
CDX98305	Canola	plastid	51.92	59.5
GSMUA_Achr7P12580_001	Banana	mitochondrion	11.1	25.16
GSMUA_AchrUn_...	Banana	cytosol	10.41	23.97
GSMUA_Achr6P09650_001	Banana	nucleus	12.47	19.28
GSMUA_Achr1P14560_001	Banana	nucleus	14.93	14.14

Protein Annotations

EnsemblPlants:GSMUA_Achr6P29710_001	EnsemblPlants:GSMUA_Achr6T29710_001	EnsemblPlantsGene:GSMUA_Achr6G29710_001	Gene3D:3.60.10.10	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:Endo/exonu/phosph_ase_sf	InterPro:Endo/exonuclease/phosphatase	InterPro:IPR036691	InterPro:Zfn-C6H2	PANTHER:PTHR12121
PANTHER:PTHR12121:SF29	PFAM:PF03372	PFAM:PF15801	SEG:seg	SUPFAM:SSF56219	TMHMM:TMhelix
UniParc:UPI0002965800	UniProt:M0TBB6	MapMan:16.8.2.1.2.1	:	:	:

Description

Carbon catabolite repressor protein 4 homolog 1 [Source:GMGC_GENE;Acc:GSMUA_Achr6G29710_001]

Coordinates

chr6:-:29891431..29898953

Molecular Weight (calculated)

82015.1 Da

IEP (calculated)

9.608

GRAVY (calculated)

-0.312

Length

730 amino acids

Sequence
(BLAST)

001: MYTMWFHIIL FSFCYFLLKF KSIYFSLNIK SFMLRRKRKI GQRNQRRLNT TRGRHKRGRE SKSQVVVVLF PSLTQRRTVS ALNHSLFSTP LTFKTLTSNP
101: FSSLAPASPN RASSSFVRRP PLQGFLAVDR AKGGQRWRNL GSGDGGSAPS PPPPIWNQRC AYEIGVGGGR GFGAARVWTW EGRIGRRGSM LTVLRVHLPS
201: EIPVVGCEIT PYVLLRRPDG SISTDDVPES APLNGYCMRY KWYRNQGDQR VAVCSVHPTE QATLQCLVCL KEKVPIAKSY HCTPRCFSDA WQHHRSLHDR
301: AKKTVNENGT DEEEVFGRFN SLNNGPIPIY PTTVAEKNGE TWSEVAFSRT YTPTADDINH VLKFECVAID VETRIPVGNV NTVLTSRVIP APSPTPRRMV
401: PVSGDLLGQL DLDGRTSSGT FSVLSYNILS DAYATSEAYS YCPTWALSWP YRRQNLLREI IGYHADILCL QEVQHDHFEE FFAPEFDKHG YQAFYKKKTS
501: EVYGGNPNTV DGCATFFRRD RFSHVKKYEV EFNKAAQSLT DVAMAAGQKK VALSRLIKDN VALIVVLEAK FSNYGTDNPG KRQLICVANT HVSVHHEHKD
601: VKLWQVHTLL KGLEKIAVSA DIPMLVCGDF DSVPGSAPHA LLANGKVDPL HPDLAVDPVG ILRPTNKITH QLPLVSVYSS FARMAGVSPG LEQQRRRMDA
701: STHEPLFTNC TRDFIGTVDY IFYTGIHLFH

Best Arabidopsis Sequence Match ( AT3G58560.1 )
(BLAST)

001: MLSVIRVHLP SEIPIVGCEL TPYVLLRRPD KTPSTDDVPE SAPLEGHFLK YRWFRVQSDK KVAICSVHPS ETATLQCLGC LKSKVPVAKS YHCSTKCFSD
101: AWQHHRVLHE RAASAATEGN DEEELPRLNS SGSGSGVLST SVSLTNGSSS VYPSAITQKT GAGGETLVEV GRSKTYTPMA DDICHVLKFE CVVVNAETKQ
201: NVGLSCTILT SRVIPAPSPS PRRLISISGT DVTGHLDSNG RPLSMGTFTV LSYNILSDTY ASSDIYSYCP TWALAWTYRR QNLLREIVKY RADIVCLQEV
301: QNDHFEEFFL PELDKHGYQG LFKRKTNEVF IGNTNTIDGC ATFFRRDRFS HVKKYEVEFN KAAQSLTEAI IPVSQKKNAL NRLVKDNVAL IVVLEAKFGS
401: QAADNPGKRQ LLCVANTHVN VPHELKDVKL WQVHTLLKGL EKIAASADIP MLVCGDFNTV PASAPHTLLA VGKVDPLHPD LMVDPLGILR PHSKLTHQLP
501: LVSAYSQFAK MGGNVITEQQ RRRLDPASSE PLFTNCTRDF IGTLDYIFYT ADTLTVESLL ELLDEESLRK DTALPSPEWS SDHIALLAEF RCMPRARRNN
601: IL

Arabidopsis Description

CCR4-1Carbon catabolite repressor protein 4 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W0Z9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.