CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03220
KRH04337
KRH28286
KRH57136
KRH58200
KRH77206

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58560.1	KRH04337	AT4G17950.1	21798944
AT3G58560.1	KRH28286	AT4G17950.1	21798944
AT3G58560.1	KRH58200	AT4G17950.1	21798944
AT3G58560.1	KRH77206	AT4G17950.1	21798944
AT3G58560.1	KRH03220	AT4G24690.1	21798944
AT3G58560.1	KRH57136	AT4G24690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68083	Soybean	cytosol	96.5	96.18
KRH71803	Soybean	cytosol	29.0	94.57
KRH38033	Soybean	cytosol	90.5	90.5
KRH71804	Soybean	cytosol	56.33	88.25
VIT_08s0007g07020.t01	Wine grape	cytosol	85.33	84.91
PGSC0003DMT400029795	Potato	cytosol	81.5	80.83
Solyc10g078950.1.1	Tomato	cytosol	74.5	79.68
AT3G58560.1	Thale cress	cytosol	78.5	78.24
CDX67751	Canola	cytosol	76.17	77.2
Bra003342.1-P	Field mustard	cytosol	76.0	77.03
Solyc03g059010.2.1	Tomato	cytosol, nucleus, plastid	76.17	76.94
Bra014566.1-P	Field mustard	cytosol	76.67	76.67
CDY00572	Canola	cytosol	76.67	76.67
AT3G58580.1	Thale cress	cytosol	76.83	76.45
CDX98303	Canola	cytosol	75.33	76.35
CDX67753	Canola	cytosol	76.0	76.0
CDX88992	Canola	mitochondrion	70.17	75.99
Bra003344.1-P	Field mustard	cytosol	72.5	75.92
GSMUA_Achr9P25420_001	Banana	cytosol	72.5	74.61
Os10t0412100-01	Rice	cytosol	75.17	74.55
Zm00001d032979_P003	Maize	cytosol	75.17	74.55
OQU91798	Sorghum	cytosol	75.0	74.26
Os03t0166800-01	Rice	cytosol	75.0	74.14
TraesCS1D01G134400.1	Wheat	cytosol	74.67	74.05
TraesCS1A01G137900.1	Wheat	cytosol	74.67	74.05
TraesCS1B01G153300.2	Wheat	cytosol	74.5	73.88
HORVU1Hr1G035390.1	Barley	cytosol	74.5	73.88
GSMUA_Achr4P17200_001	Banana	cytosol	71.83	73.8
GSMUA_Achr9P11040_001	Banana	cytosol, peroxisome, vacuole	70.83	73.66
Bra007403.1-P	Field mustard	cytosol	73.17	73.53
CDX71943	Canola	cytosol	73.67	73.42
Zm00001d014187_P011	Maize	cytosol	73.5	73.13
CDY49233	Canola	cytosol	73.0	73.0
KXG40109	Sorghum	mitochondrion	74.67	72.26
CDX98305	Canola	plastid	75.0	70.64
Zm00001d027811_P001	Maize	mitochondrion	75.0	69.88
GSMUA_Achr6P29710_001	Banana	endoplasmic reticulum, golgi	66.17	54.38
KRH48475	Soybean	cytosol	14.83	31.01
KRH41616	Soybean	cytosol	16.33	26.7
KRH39200	Soybean	nucleus, plastid	18.83	26.4
KRH39729	Soybean	plastid	16.67	25.58
KRH60320	Soybean	plastid	18.33	25.29
KRH76418	Soybean	nucleus	12.0	24.83
KRH16019	Soybean	plastid	19.5	13.73
KRH05096	Soybean	cytosol	9.17	10.78

Protein Annotations

EntrezGene:100775270	MapMan:16.8.2.1.2.1	Gene3D:3.60.10.10	EMBL:ACUP02012152	InterPro:Endo/exonu/phosph_ase_sf	InterPro:Endo/exonuclease/phosphatase
EnsemblPlantsGene:GLYMA_19G204800	UniProt:I1NAZ4	InterPro:IPR036691	EnsemblPlants:KRG96349	ProteinID:KRG96349	ProteinID:KRG96349.1
ProteinID:KRG96350.1	PFAM:PF03372	PFAM:PF15801	PANTHER:PTHR12121	PANTHER:PTHR12121:SF29	MetaCyc:PWY-7799
MetaCyc:PWY-7800	SUPFAM:SSF56219	UniParc:UPI000233E044	InterPro:Zfn-C6H2	SEG:seg	:

Description

hypothetical protein

Coordinates

chr19:-:46092288..46098524

Molecular Weight (calculated)

66886.4 Da

IEP (calculated)

6.922

GRAVY (calculated)

-0.265

Length

600 amino acids

Sequence
(BLAST)

001: MLSVLRVHLP SDIPIVGCEL TPYVLLRRPD KIVTTDDVPE TAPLDGHFLR YKWYRVQSDK KVAVCSVHPS EPATLQCLGC VKSKIPVAKS YHCTPKCFSD
101: AWQHHRVLHD RAASAANENG NEEEELYGRF NNSGSGSINT SLSASASSAS LTNGSAPVYP AAVTQRSGGE TWFEVGQFKT YTPTADDIGH VLKFECTVVD
201: AETKLTVGHV NTLLTSRVIP APSPSPRRLI PVDGMGHLDA DGRITSSGTF TVLSYNILSD AYASNDLYNY CPTWALSWPY RRQNLLREIV GYRADIICLQ
301: EVQSDHYEDF FSPELDKHGY YGFYKRKTNE VYNGNINTID GCATFFRRDR FSHVKKYEVE FNKAAQSLTD AVIPTTQKKT ALNRLVKDNI ALIVVLEAKV
401: INQPVDNPGK RQLLCVANTH VNVHHDLMDV KLWQVHTLLK GLEKIAASAD IPMLVCGDFN SIPGSAPHAL LAMGKVDPSH PDLAVDPLNI LRPHSKLVHQ
501: LPLVSAYSSF ARTVGLGFEQ HKRRLDDTTN EPLFTNVTRD FIGSLDYIFY TADSLVVESL LELLDEESLR KDTALPSPEW SSDHIALLAE FRCCKNRSRR

Best Arabidopsis Sequence Match ( AT3G58580.1 )
(BLAST)

001: MLSVIRVHLP SEIPIVGCEL TPYVLVRRPD KNSTTDDVPE SAPLEGYFLR YRWYRVQSDK KVTICSVHPT EQATLQCVFC SKRRSLVPKS YHCSPKCFTD
101: AWQHHRTLHE RAAAENNANE DDDLNRNNSA GSGSLAGSLS GSMSNLSIAN NGPAPFYPSN ITQKNGGETL VEVGGCKTYT PTADDISHVL KFECVVANAE
201: TKQIVGHPST ILTSRVIPAP SPSPRKLIPV NGADGMGHLD QDARIQSAGS FTVLSYNILS DTSASSDLYS YCPPWALSWP YRRQNLLREI VGYRADVVCL
301: QEVQSDHFHE IFAPELDKHG YQALYKRKTN EVLSGSTSAI DGCATFFRRD RFSHVKKYDV EFNKAAQSLT DALIPQAQKR TALNRLVKDN IALIVVLEAK
401: FGNQPTDPSG KRQLICVANT HVNVQQDLKD VKLWQVHTLL KGLEKIAASA DIPMLVCGDF NTLPGSAPHT LLVMGKVDPM HPDLAVDPLN ILRPHTKLTH
501: QLPLVSAYSS FVRKGIMGLG LEQHRRRIDL NTNEPLFTNC TRDFIGTHDY IFYTADTLMV ESLLELLDED GLRKDTALPS PEWSSNHIAL LAEFRCTPRT
601: RRG

Arabidopsis Description

CCR4-2Carbon catabolite repressor protein 4 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2F8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.