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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX67751 Canola cytosol 98.14 98.14
Bra003342.1-P Field mustard cytosol 97.8 97.8
AT3G58560.1 Thale cress cytosol 88.34 86.88
KRH71803 Soybean cytosol 26.01 83.7
CDY00572 Canola cytosol 77.7 76.67
VIT_08s0007g07020.t01 Wine grape cytosol 78.04 76.62
CDX67753 Canola cytosol 77.53 76.5
PGSC0003DMT400029795 Potato cytosol 77.53 75.87
CDY49233 Canola cytosol 76.69 75.67
KRH38033 Soybean cytosol 76.69 75.67
CDX88992 Canola mitochondrion 70.78 75.63
CDX71943 Canola cytosol 76.86 75.58
KRG96349 Soybean cytosol 76.35 75.33
KRH68083 Soybean cytosol 76.52 75.25
Solyc10g078950.1.1 Tomato cytosol 69.93 73.8
GSMUA_Achr4P17200_001 Banana cytosol 71.62 72.6
KRH71804 Soybean cytosol 46.62 72.06
GSMUA_Achr9P25420_001 Banana cytosol 70.61 71.7
CDX98305 Canola plastid 76.69 71.27
Os10t0412100-01 Rice cytosol 72.47 70.91
GSMUA_Achr9P11040_001 Banana cytosol, peroxisome, vacuole 69.09 70.88
Solyc03g059010.2.1 Tomato cytosol, nucleus, plastid 70.78 70.54
Os03t0166800-01 Rice cytosol 71.96 70.18
HORVU1Hr1G035390.1 Barley cytosol 71.62 70.08
TraesCS1D01G134400.1 Wheat cytosol 71.45 69.92
TraesCS1B01G153300.2 Wheat cytosol 71.45 69.92
TraesCS1A01G137900.1 Wheat cytosol 71.45 69.92
OQU91798 Sorghum cytosol 71.45 69.8
Zm00001d032979_P003 Maize cytosol 71.28 69.75
Zm00001d014187_P011 Maize cytosol 70.1 68.82
KXG40109 Sorghum mitochondrion 70.95 67.74
Zm00001d027811_P001 Maize mitochondrion 69.76 64.13
GSMUA_Achr6P29710_001 Banana endoplasmic reticulum, golgi 64.19 52.05
CDY12304 Canola plastid 19.26 28.5
CDY27147 Canola plastid 18.41 28.24
CDY12415 Canola plastid 17.57 27.96
CDY62302 Canola mitochondrion, plastid 19.26 26.51
CDX96494 Canola plastid 19.43 26.08
CDX73024 Canola plastid 19.59 25.55
CDX92241 Canola mitochondrion, nucleus, plastid 18.92 24.89
CDY24484 Canola mitochondrion 18.58 24.44
CDX97099 Canola plastid 20.95 16.49
CDX69764 Canola mitochondrion, plastid 20.61 16.14
CDX97100 Canola plastid 0.0 0.0
Protein Annotations
EnsemblPlants:CDX98303EnsemblPlantsGene:GSBRNA2T00105843001Gene3D:3.60.10.10InterPro:Endo/exonu/phosph_ase_sfInterPro:Endo/exonuclease/phosphataseInterPro:IPR036691
InterPro:Zfn-C6H2PANTHER:PTHR12121PANTHER:PTHR12121:SF29PFAM:PF03372PFAM:PF15801ProteinID:CDX98303
ProteinID:CDX98303.1SEG:segSUPFAM:SSF56219UniParc:UPI0004EB802BMapMan:16.8.2.1.2.1:
Description
BnaC06g16640D
Coordinates
chrLK031904:-:449662..452948
Molecular Weight (calculated)
65766.7 Da
IEP (calculated)
7.422
GRAVY (calculated)
-0.209
Length
592 amino acids
Sequence
(BLAST)
001: MLSVIRVHLP SEVPIVGCEL TPYVLLRRPD NTATTDDVPE SSPLDGHFLK YRWYRVQSDK KVAICSVHPS KEATLQCLGC IKTKVPVTKS YHCSTKCFTD
101: AWQHHRVLHE RAAAEGNGEE EELLRLNSSG SVSSILSTVS SLTNGSSSSV YPSSISQKTG AGGETLVEVG RSKTYTPMAD DVGHVLKFEC VVVNAETKQN
201: VGHSCTILTS RVIPAPSPSP RRMIPVSGAV DSNGRPMSMG SFTLLSYNIL ADAYASSEIY SYCPTWALSW TYRRQNLLRE IVKYHADIVC LQEVQNDHFD
301: EFFAPELDKH GYQAIFKRKT NEVFVGNTST IDGCATFYRR DRFSHVKKYE VEFNKAAQSL TEALIPVPQK KIALNRLVKD NVALIVVLEA KFGNQAADIP
401: GKRQLLCVAN THVNISHELK DVKLWQVHTL LKGLEKIAAS ADIPMLVCGD FNTVPASAPH SLLALGKVDP MHPDLMVDPL GILRPHTKLT HQLPLVSAYS
501: SFARMGGSLT AEQQRRRMDP ASNEPLFTNC TRDFIGTLDY IFYTADTLTV ESLLELLDEE SLRKDTALPS PEWSSDHIAL LAEFRCMPKT RR
Best Arabidopsis Sequence Match ( AT3G58560.1 )
(BLAST)
001: MLSVIRVHLP SEIPIVGCEL TPYVLLRRPD KTPSTDDVPE SAPLEGHFLK YRWFRVQSDK KVAICSVHPS ETATLQCLGC LKSKVPVAKS YHCSTKCFSD
101: AWQHHRVLHE RAASAATEGN DEEELPRLNS SGSGSGVLST SVSLTNGSSS VYPSAITQKT GAGGETLVEV GRSKTYTPMA DDICHVLKFE CVVVNAETKQ
201: NVGLSCTILT SRVIPAPSPS PRRLISISGT DVTGHLDSNG RPLSMGTFTV LSYNILSDTY ASSDIYSYCP TWALAWTYRR QNLLREIVKY RADIVCLQEV
301: QNDHFEEFFL PELDKHGYQG LFKRKTNEVF IGNTNTIDGC ATFFRRDRFS HVKKYEVEFN KAAQSLTEAI IPVSQKKNAL NRLVKDNVAL IVVLEAKFGS
401: QAADNPGKRQ LLCVANTHVN VPHELKDVKL WQVHTLLKGL EKIAASADIP MLVCGDFNTV PASAPHTLLA VGKVDPLHPD LMVDPLGILR PHSKLTHQLP
501: LVSAYSQFAK MGGNVITEQQ RRRLDPASSE PLFTNCTRDF IGTLDYIFYT ADTLTVESLL ELLDEESLRK DTALPSPEWS SDHIALLAEF RCMPRARRNN
601: IL
Arabidopsis Description
CCR4-1Carbon catabolite repressor protein 4 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W0Z9]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.