Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDX67751 | Canola | cytosol | 98.14 | 98.14 |
Bra003342.1-P | Field mustard | cytosol | 97.8 | 97.8 |
AT3G58560.1 | Thale cress | cytosol | 88.34 | 86.88 |
KRH71803 | Soybean | cytosol | 26.01 | 83.7 |
CDY00572 | Canola | cytosol | 77.7 | 76.67 |
VIT_08s0007g07020.t01 | Wine grape | cytosol | 78.04 | 76.62 |
CDX67753 | Canola | cytosol | 77.53 | 76.5 |
PGSC0003DMT400029795 | Potato | cytosol | 77.53 | 75.87 |
CDY49233 | Canola | cytosol | 76.69 | 75.67 |
KRH38033 | Soybean | cytosol | 76.69 | 75.67 |
CDX88992 | Canola | mitochondrion | 70.78 | 75.63 |
CDX71943 | Canola | cytosol | 76.86 | 75.58 |
KRG96349 | Soybean | cytosol | 76.35 | 75.33 |
KRH68083 | Soybean | cytosol | 76.52 | 75.25 |
Solyc10g078950.1.1 | Tomato | cytosol | 69.93 | 73.8 |
GSMUA_Achr4P17200_001 | Banana | cytosol | 71.62 | 72.6 |
KRH71804 | Soybean | cytosol | 46.62 | 72.06 |
GSMUA_Achr9P25420_001 | Banana | cytosol | 70.61 | 71.7 |
CDX98305 | Canola | plastid | 76.69 | 71.27 |
Os10t0412100-01 | Rice | cytosol | 72.47 | 70.91 |
GSMUA_Achr9P11040_001 | Banana | cytosol, peroxisome, vacuole | 69.09 | 70.88 |
Solyc03g059010.2.1 | Tomato | cytosol, nucleus, plastid | 70.78 | 70.54 |
Os03t0166800-01 | Rice | cytosol | 71.96 | 70.18 |
HORVU1Hr1G035390.1 | Barley | cytosol | 71.62 | 70.08 |
TraesCS1D01G134400.1 | Wheat | cytosol | 71.45 | 69.92 |
TraesCS1B01G153300.2 | Wheat | cytosol | 71.45 | 69.92 |
TraesCS1A01G137900.1 | Wheat | cytosol | 71.45 | 69.92 |
OQU91798 | Sorghum | cytosol | 71.45 | 69.8 |
Zm00001d032979_P003 | Maize | cytosol | 71.28 | 69.75 |
Zm00001d014187_P011 | Maize | cytosol | 70.1 | 68.82 |
KXG40109 | Sorghum | mitochondrion | 70.95 | 67.74 |
Zm00001d027811_P001 | Maize | mitochondrion | 69.76 | 64.13 |
GSMUA_Achr6P29710_001 | Banana | endoplasmic reticulum, golgi | 64.19 | 52.05 |
CDY12304 | Canola | plastid | 19.26 | 28.5 |
CDY27147 | Canola | plastid | 18.41 | 28.24 |
CDY12415 | Canola | plastid | 17.57 | 27.96 |
CDY62302 | Canola | mitochondrion, plastid | 19.26 | 26.51 |
CDX96494 | Canola | plastid | 19.43 | 26.08 |
CDX73024 | Canola | plastid | 19.59 | 25.55 |
CDX92241 | Canola | mitochondrion, nucleus, plastid | 18.92 | 24.89 |
CDY24484 | Canola | mitochondrion | 18.58 | 24.44 |
CDX97099 | Canola | plastid | 20.95 | 16.49 |
CDX69764 | Canola | mitochondrion, plastid | 20.61 | 16.14 |
CDX97100 | Canola | plastid | 0.0 | 0.0 |
Protein Annotations
EnsemblPlants:CDX98303 | EnsemblPlantsGene:GSBRNA2T00105843001 | Gene3D:3.60.10.10 | InterPro:Endo/exonu/phosph_ase_sf | InterPro:Endo/exonuclease/phosphatase | InterPro:IPR036691 |
InterPro:Zfn-C6H2 | PANTHER:PTHR12121 | PANTHER:PTHR12121:SF29 | PFAM:PF03372 | PFAM:PF15801 | ProteinID:CDX98303 |
ProteinID:CDX98303.1 | SEG:seg | SUPFAM:SSF56219 | UniParc:UPI0004EB802B | MapMan:16.8.2.1.2.1 | : |
Description
BnaC06g16640D
Coordinates
chrLK031904:-:449662..452948
Molecular Weight (calculated)
65766.7 Da
IEP (calculated)
7.422
GRAVY (calculated)
-0.209
Length
592 amino acids
Sequence
(BLAST)
(BLAST)
001: MLSVIRVHLP SEVPIVGCEL TPYVLLRRPD NTATTDDVPE SSPLDGHFLK YRWYRVQSDK KVAICSVHPS KEATLQCLGC IKTKVPVTKS YHCSTKCFTD
101: AWQHHRVLHE RAAAEGNGEE EELLRLNSSG SVSSILSTVS SLTNGSSSSV YPSSISQKTG AGGETLVEVG RSKTYTPMAD DVGHVLKFEC VVVNAETKQN
201: VGHSCTILTS RVIPAPSPSP RRMIPVSGAV DSNGRPMSMG SFTLLSYNIL ADAYASSEIY SYCPTWALSW TYRRQNLLRE IVKYHADIVC LQEVQNDHFD
301: EFFAPELDKH GYQAIFKRKT NEVFVGNTST IDGCATFYRR DRFSHVKKYE VEFNKAAQSL TEALIPVPQK KIALNRLVKD NVALIVVLEA KFGNQAADIP
401: GKRQLLCVAN THVNISHELK DVKLWQVHTL LKGLEKIAAS ADIPMLVCGD FNTVPASAPH SLLALGKVDP MHPDLMVDPL GILRPHTKLT HQLPLVSAYS
501: SFARMGGSLT AEQQRRRMDP ASNEPLFTNC TRDFIGTLDY IFYTADTLTV ESLLELLDEE SLRKDTALPS PEWSSDHIAL LAEFRCMPKT RR
101: AWQHHRVLHE RAAAEGNGEE EELLRLNSSG SVSSILSTVS SLTNGSSSSV YPSSISQKTG AGGETLVEVG RSKTYTPMAD DVGHVLKFEC VVVNAETKQN
201: VGHSCTILTS RVIPAPSPSP RRMIPVSGAV DSNGRPMSMG SFTLLSYNIL ADAYASSEIY SYCPTWALSW TYRRQNLLRE IVKYHADIVC LQEVQNDHFD
301: EFFAPELDKH GYQAIFKRKT NEVFVGNTST IDGCATFYRR DRFSHVKKYE VEFNKAAQSL TEALIPVPQK KIALNRLVKD NVALIVVLEA KFGNQAADIP
401: GKRQLLCVAN THVNISHELK DVKLWQVHTL LKGLEKIAAS ADIPMLVCGD FNTVPASAPH SLLALGKVDP MHPDLMVDPL GILRPHTKLT HQLPLVSAYS
501: SFARMGGSLT AEQQRRRMDP ASNEPLFTNC TRDFIGTLDY IFYTADTLTV ESLLELLDEE SLRKDTALPS PEWSSDHIAL LAEFRCMPKT RR
001: MLSVIRVHLP SEIPIVGCEL TPYVLLRRPD KTPSTDDVPE SAPLEGHFLK YRWFRVQSDK KVAICSVHPS ETATLQCLGC LKSKVPVAKS YHCSTKCFSD
101: AWQHHRVLHE RAASAATEGN DEEELPRLNS SGSGSGVLST SVSLTNGSSS VYPSAITQKT GAGGETLVEV GRSKTYTPMA DDICHVLKFE CVVVNAETKQ
201: NVGLSCTILT SRVIPAPSPS PRRLISISGT DVTGHLDSNG RPLSMGTFTV LSYNILSDTY ASSDIYSYCP TWALAWTYRR QNLLREIVKY RADIVCLQEV
301: QNDHFEEFFL PELDKHGYQG LFKRKTNEVF IGNTNTIDGC ATFFRRDRFS HVKKYEVEFN KAAQSLTEAI IPVSQKKNAL NRLVKDNVAL IVVLEAKFGS
401: QAADNPGKRQ LLCVANTHVN VPHELKDVKL WQVHTLLKGL EKIAASADIP MLVCGDFNTV PASAPHTLLA VGKVDPLHPD LMVDPLGILR PHSKLTHQLP
501: LVSAYSQFAK MGGNVITEQQ RRRLDPASSE PLFTNCTRDF IGTLDYIFYT ADTLTVESLL ELLDEESLRK DTALPSPEWS SDHIALLAEF RCMPRARRNN
601: IL
101: AWQHHRVLHE RAASAATEGN DEEELPRLNS SGSGSGVLST SVSLTNGSSS VYPSAITQKT GAGGETLVEV GRSKTYTPMA DDICHVLKFE CVVVNAETKQ
201: NVGLSCTILT SRVIPAPSPS PRRLISISGT DVTGHLDSNG RPLSMGTFTV LSYNILSDTY ASSDIYSYCP TWALAWTYRR QNLLREIVKY RADIVCLQEV
301: QNDHFEEFFL PELDKHGYQG LFKRKTNEVF IGNTNTIDGC ATFFRRDRFS HVKKYEVEFN KAAQSLTEAI IPVSQKKNAL NRLVKDNVAL IVVLEAKFGS
401: QAADNPGKRQ LLCVANTHVN VPHELKDVKL WQVHTLLKGL EKIAASADIP MLVCGDFNTV PASAPHTLLA VGKVDPLHPD LMVDPLGILR PHSKLTHQLP
501: LVSAYSQFAK MGGNVITEQQ RRRLDPASSE PLFTNCTRDF IGTLDYIFYT ADTLTVESLL ELLDEESLRK DTALPSPEWS SDHIALLAEF RCMPRARRNN
601: IL
Arabidopsis Description
CCR4-1Carbon catabolite repressor protein 4 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W0Z9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.