Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY41027 | Canola | cytosol | 50.17 | 56.77 |
| CDY26693 | Canola | plastid | 50.5 | 56.3 |
| CDY26694 | Canola | cytosol, plastid | 48.51 | 55.73 |
| CDY01503 | Canola | cytosol | 44.85 | 52.12 |
| CDY68252 | Canola | nucleus | 50.17 | 50.84 |
| CDY41028 | Canola | nucleus, plastid | 41.53 | 50.4 |
| CDY26692 | Canola | nucleus | 50.17 | 49.84 |
| CDY26691 | Canola | cytosol, plastid | 49.5 | 47.91 |
| CDX78814 | Canola | nucleus | 59.47 | 43.98 |
| CDY44500 | Canola | nucleus | 59.14 | 42.38 |
| CDY08882 | Canola | nucleus | 60.13 | 41.61 |
| CDX76549 | Canola | nucleus | 60.13 | 41.14 |
| AT4G17950.1 | Thale cress | nucleus | 56.48 | 38.72 |
| GSMUA_Achr5P03370_001 | Banana | mitochondrion, plastid | 24.25 | 38.42 |
| CDY03203 | Canola | nucleus | 42.19 | 35.47 |
| CDY35172 | Canola | nucleus | 40.2 | 34.28 |
| Solyc04g053090.1.1 | Tomato | plastid | 18.27 | 32.54 |
| Os10t0572900-02 | Rice | nucleus | 26.58 | 31.87 |
| CDX79537 | Canola | mitochondrion, nucleus, plastid | 27.24 | 31.3 |
| CDX84679 | Canola | nucleus | 26.91 | 30.92 |
| HORVU7Hr1G065300.2 | Barley | mitochondrion, plastid | 19.27 | 30.69 |
| CDY07239 | Canola | plasma membrane | 23.26 | 30.3 |
| Solyc04g053100.1.1 | Tomato | plastid | 16.61 | 30.12 |
| VIT_02s0012g00900.t01 | Wine grape | nucleus | 34.22 | 29.18 |
| HORVU2Hr1G105800.13 | Barley | cytosol, vacuole | 28.57 | 28.01 |
| GSMUA_Achr4P27240_001 | Banana | cytosol, extracellular, nucleus, plastid | 32.23 | 27.56 |
| Os04t0589900-01 | Rice | nucleus | 34.22 | 27.18 |
| GSMUA_Achr2P09840_001 | Banana | nucleus | 31.89 | 26.89 |
| OQU82226 | Sorghum | plastid | 30.56 | 26.51 |
| KRH58200 | Soybean | nucleus | 31.23 | 25.97 |
| CDY07238 | Canola | nucleus | 27.24 | 25.95 |
| PGSC0003DMT400052826 | Potato | nucleus | 30.23 | 25.28 |
| KRH04337 | Soybean | nucleus | 29.24 | 24.72 |
| Zm00001d026036_P001 | Maize | nucleus | 32.89 | 24.63 |
| KRH28286 | Soybean | plastid | 27.57 | 24.48 |
| KRH77206 | Soybean | nucleus | 27.24 | 24.26 |
| CDX98767 | Canola | nucleus | 26.25 | 24.01 |
| CDX94122 | Canola | cytosol, nucleus, plasma membrane | 26.25 | 24.01 |
| CDY48928 | Canola | nucleus | 27.24 | 23.84 |
| CDY42495 | Canola | nucleus | 26.58 | 23.67 |
| TraesCS2A01G449500.1 | Wheat | plastid | 32.23 | 23.66 |
| CDY41291 | Canola | nucleus | 23.92 | 23.61 |
| CDX71746 | Canola | nucleus | 26.91 | 23.55 |
| TraesCS2B01G470900.1 | Wheat | cytosol, nucleus, peroxisome, plastid | 32.23 | 23.54 |
| TraesCS2D01G448900.1 | Wheat | cytosol, nucleus, peroxisome, plastid | 31.89 | 23.3 |
| CDY37070 | Canola | nucleus | 26.25 | 23.17 |
| Zm00001d030053_P003 | Maize | plastid | 31.56 | 22.78 |
| CDY47428 | Canola | nucleus | 23.26 | 22.65 |
| CDY51561 | Canola | nucleus | 25.58 | 22.65 |
| Zm00001d047042_P004 | Maize | cytosol, nucleus, plasma membrane | 32.23 | 22.61 |
| KXG38867 | Sorghum | plastid | 31.56 | 22.46 |
| CDY37704 | Canola | nucleus | 27.91 | 22.4 |
| CDX89109 | Canola | nucleus | 24.92 | 22.39 |
| CDY27354 | Canola | nucleus | 25.91 | 22.35 |
| CDY58791 | Canola | nucleus | 24.25 | 22.26 |
| CDY04392 | Canola | nucleus | 19.6 | 22.01 |
| CDY30005 | Canola | nucleus | 26.91 | 21.26 |
| CDY65362 | Canola | nucleus | 26.25 | 21.24 |
| Solyc08g006950.2.1 | Tomato | nucleus | 27.57 | 21.23 |
| CDY52506 | Canola | nucleus | 24.58 | 21.2 |
| CDY52477 | Canola | nucleus | 25.91 | 21.2 |
| CDY23720 | Canola | extracellular, plasma membrane, vacuole | 27.91 | 21.11 |
| CDY05594 | Canola | nucleus | 24.92 | 21.07 |
| CDY21122 | Canola | nucleus | 26.91 | 20.98 |
| TraesCS1B01G206100.2 | Wheat | nucleus | 31.23 | 20.84 |
| TraesCS1A01G190900.1 | Wheat | nucleus | 31.23 | 20.7 |
| TraesCS1D01G194900.2 | Wheat | nucleus | 31.23 | 20.7 |
| CDX82971 | Canola | plastid | 14.62 | 20.47 |
| HORVU1Hr1G049980.12 | Barley | nucleus | 31.23 | 20.26 |
| CDY16785 | Canola | nucleus | 25.91 | 19.9 |
| CDY25500 | Canola | nucleus | 24.25 | 19.73 |
| CDY64088 | Canola | nucleus, plasma membrane, plastid | 23.59 | 19.61 |
| CDY00271 | Canola | nucleus | 26.25 | 19.6 |
| CDX94457 | Canola | nucleus | 24.58 | 19.58 |
| CDX86910 | Canola | nucleus | 25.91 | 19.55 |
| CDX87241 | Canola | nucleus | 25.25 | 19.44 |
| CDY34355 | Canola | nucleus | 24.25 | 19.31 |
| CDY45364 | Canola | nucleus | 23.26 | 19.07 |
| CDY30710 | Canola | nucleus | 25.25 | 18.95 |
| CDX89422 | Canola | nucleus | 23.92 | 18.75 |
| CDX92693 | Canola | nucleus | 24.58 | 18.69 |
| CDY00488 | Canola | nucleus | 26.58 | 18.65 |
| CDY49703 | Canola | nucleus | 24.58 | 18.55 |
| CDY38874 | Canola | nucleus | 25.91 | 18.44 |
| CDX99902 | Canola | nucleus | 26.25 | 18.0 |
| CDY32624 | Canola | nucleus | 25.25 | 17.92 |
| CDX91598 | Canola | nucleus | 24.92 | 17.9 |
| CDY13231 | Canola | nucleus | 24.25 | 17.8 |
| CDY65097 | Canola | nucleus | 23.92 | 17.18 |
| CDY39751 | Canola | nucleus | 21.26 | 16.75 |
| CDY46385 | Canola | nucleus | 20.93 | 16.49 |
Protein Annotations
| EnsemblPlants:CDY01506 | EnsemblPlantsGene:GSBRNA2T00112523001 | Gene3D:3.30.1330.80 | InterPro:IPR005175 | InterPro:PPC_dom | PANTHER:PTHR31500 |
| PANTHER:PTHR31500:SF44 | PFAM:PF03479 | PFscan:PS51742 | ProteinID:CDY01506 | ProteinID:CDY01506.1 | SEG:seg |
| SUPFAM:SSF117856 | UniParc:UPI0004EDC8F3 | MapMan:35.1 | : | : | : |
Description
BnaC07g34960D
Coordinates
chrLK031927:-:211259..212562
Molecular Weight (calculated)
31278.4 Da
IEP (calculated)
9.397
GRAVY (calculated)
-0.527
Length
301 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSKETNEHQ QLQPPHGTVT GSYNRNAAAL TGPSSTSQAM QHRLSVGALS LRQPQQPLGI EGSPSSVSTQ FRNEQRGRAR GRVRGRPRKY ADVIDDDGGG
101: AGGAETLLTP HLINVKAGED IAAKIVAFTN QGPLESSILS ASGAVSSAVL RHSNNPNNPS GVVKYEGVYD IIAMSGSFLN TESNGTVTRT SDMNVHIAGP
201: DGRILAGFVA GMLVARSQVQ VVVGSFVSEK VKVSATRVEN NPEPASASGS SSASGGGPGS PQSQGPPSES SEENDCINNK NYKVGKSTPR PLQLLPGNNP
301: K
101: AGGAETLLTP HLINVKAGED IAAKIVAFTN QGPLESSILS ASGAVSSAVL RHSNNPNNPS GVVKYEGVYD IIAMSGSFLN TESNGTVTRT SDMNVHIAGP
201: DGRILAGFVA GMLVARSQVQ VVVGSFVSEK VKVSATRVEN NPEPASASGS SSASGGGPGS PQSQGPPSES SEENDCINNK NYKVGKSTPR PLQLLPGNNP
301: K
001: MDSREIHHQQ QQQQQQQQQQ QQQQQHLQQQ QQPPPGMLMS HHNSYNRNPN AAAAVLMGHN TSTSQAMHQR LPFGGSMSPH QPQQHQYHHP QPQQQIDQKT
101: LESLGFDGSP SSVAATQQHS MRFGIDHQQV KKKRGRPRKY AADGGGGGGG GSNIALGLAP TSPLPSASNS YGGGNEGGGG GDSAGANANS SDPPAKRNRG
201: RPPGSGKKQL DALGGTGGVG FTPHVIEVKT GEDIATKILA FTNQGPRAIC ILSATGAVTN VMLRQANNSN PTGTVKYEGR FEIISLSGSF LNSESNGTVT
301: KTGNLSVSLA GHEGRIVGGC VDGMLVAGSQ VQVIVGSFVP DGRKQKQSAG RAQNTPEPAS APANMLSFGG VGGPGSPRSQ GQQHSSESSE ENESNSPLHR
401: RSNNNNSNNH GIFGNSTPQP LHQIPMQMYQ NLWPGNSPQ
101: LESLGFDGSP SSVAATQQHS MRFGIDHQQV KKKRGRPRKY AADGGGGGGG GSNIALGLAP TSPLPSASNS YGGGNEGGGG GDSAGANANS SDPPAKRNRG
201: RPPGSGKKQL DALGGTGGVG FTPHVIEVKT GEDIATKILA FTNQGPRAIC ILSATGAVTN VMLRQANNSN PTGTVKYEGR FEIISLSGSF LNSESNGTVT
301: KTGNLSVSLA GHEGRIVGGC VDGMLVAGSQ VQVIVGSFVP DGRKQKQSAG RAQNTPEPAS APANMLSFGG VGGPGSPRSQ GQQHSSESSE ENESNSPLHR
401: RSNNNNSNNH GIFGNSTPQP LHQIPMQMYQ NLWPGNSPQ
Arabidopsis Description
AHL13AT-hook motif nuclear-localized protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q940I0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.