Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 1
- plastid 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G190900.1 | Wheat | nucleus | 98.89 | 98.24 |
| TraesCS1D01G194900.2 | Wheat | nucleus | 98.45 | 97.8 |
| HORVU1Hr1G049980.12 | Barley | nucleus | 98.0 | 95.26 |
| Os10t0572900-02 | Rice | nucleus | 52.55 | 94.42 |
| KXG38867 | Sorghum | plastid | 73.84 | 78.72 |
| Zm00001d030053_P003 | Maize | plastid | 71.4 | 77.22 |
| Zm00001d047042_P004 | Maize | cytosol, nucleus, plasma membrane | 73.17 | 76.92 |
| GSMUA_Achr5P03370_001 | Banana | mitochondrion, plastid | 29.49 | 70.0 |
| GSMUA_Achr4P27240_001 | Banana | cytosol, extracellular, nucleus, plastid | 46.56 | 59.66 |
| GSMUA_Achr2P09840_001 | Banana | nucleus | 45.68 | 57.7 |
| VIT_02s0012g00900.t01 | Wine grape | nucleus | 39.91 | 50.99 |
| TraesCS2B01G470900.1 | Wheat | cytosol, nucleus, peroxisome, plastid | 43.02 | 47.09 |
| PGSC0003DMT400045147 | Potato | plastid | 34.37 | 46.97 |
| Solyc04g053090.1.1 | Tomato | plastid | 17.29 | 46.15 |
| KRH58200 | Soybean | nucleus | 34.59 | 43.09 |
| TraesCS7B01G143000.1 | Wheat | nucleus | 34.37 | 42.94 |
| Solyc04g053100.1.1 | Tomato | plastid | 15.74 | 42.77 |
| KRH04337 | Soybean | nucleus | 32.15 | 40.73 |
| Solyc08g077030.2.1 | Tomato | nucleus | 36.14 | 39.85 |
| CDY01503 | Canola | cytosol | 22.84 | 39.77 |
| TraesCS5B01G266600.1 | Wheat | endoplasmic reticulum, mitochondrion, nucleus, peroxisome | 34.15 | 38.99 |
| KRH28286 | Soybean | plastid | 29.05 | 38.64 |
| KRH77206 | Soybean | nucleus | 28.82 | 38.46 |
| PGSC0003DMT400052826 | Potato | nucleus | 30.38 | 38.06 |
| AT5G46640.1 | Thale cress | nucleus | 30.38 | 35.49 |
| CDY03203 | Canola | nucleus | 27.49 | 34.64 |
| Solyc08g006950.2.1 | Tomato | nucleus | 29.71 | 34.27 |
| Bra017536.1-P | Field mustard | nucleus | 26.39 | 33.71 |
| CDY35172 | Canola | nucleus | 26.39 | 33.71 |
| CDX78814 | Canola | nucleus | 30.16 | 33.42 |
| Bra021027.1-P | Field mustard | nucleus | 29.71 | 32.68 |
| TraesCS7B01G215600.1 | Wheat | plastid | 28.16 | 32.23 |
| CDY44500 | Canola | nucleus | 29.71 | 31.9 |
| TraesCS5B01G130400.1 | Wheat | plastid | 25.94 | 31.79 |
| AT4G17950.1 | Thale cress | nucleus | 30.82 | 31.66 |
| CDY68252 | Canola | nucleus | 20.84 | 31.65 |
| CDY41027 | Canola | cytosol | 18.63 | 31.58 |
| CDY08882 | Canola | nucleus | 30.38 | 31.49 |
| CDY41028 | Canola | nucleus, plastid | 17.29 | 31.45 |
| TraesCS5B01G129200.1 | Wheat | plastid | 25.5 | 31.34 |
| CDY01506 | Canola | nucleus | 20.84 | 31.23 |
| CDX76549 | Canola | nucleus | 30.38 | 31.14 |
| CDY26693 | Canola | plastid | 18.63 | 31.11 |
| Bra025716.1-P | Field mustard | nucleus | 18.4 | 30.86 |
| Bra025717.1-P | Field mustard | nucleus | 20.62 | 30.69 |
| CDY26692 | Canola | nucleus | 20.62 | 30.69 |
| TraesCS7B01G035400.1 | Wheat | cytosol | 13.53 | 30.5 |
| Bra025718.1-P | Field mustard | nucleus, plastid | 20.4 | 30.26 |
| CDY26694 | Canola | cytosol, plastid | 17.52 | 30.15 |
| CDY26691 | Canola | cytosol, plastid | 20.4 | 29.58 |
| Bra013270.1-P | Field mustard | nucleus | 27.72 | 29.34 |
| TraesCS6B01G114000.1 | Wheat | cytosol, nucleus, peroxisome | 25.28 | 29.16 |
| TraesCS6B01G447600.1 | Wheat | nucleus | 28.16 | 26.96 |
| TraesCS2B01G604700.1 | Wheat | nucleus | 23.73 | 26.55 |
| TraesCS7B01G035900.1 | Wheat | nucleus | 20.4 | 25.34 |
| TraesCS5B01G266500.1 | Wheat | cytosol | 1.33 | 5.13 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G206100.2 | EnsemblPlantsGene:TraesCS1B01G206100 | Gene3D:3.30.1330.80 | InterPro:IPR005175 | InterPro:PPC_dom | PANTHER:PTHR31500 |
| PANTHER:PTHR31500:SF25 | PFAM:PF03479 | PFscan:PS51742 | SEG:seg | SUPFAM:SSF117856 | TIGR:cd11378 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr1B:-:372219994..372222857
Molecular Weight (calculated)
46969.4 Da
IEP (calculated)
10.121
GRAVY (calculated)
-0.666
Length
451 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAKDVAPLT AAAPTAPAPA PAPAPAPVSQ AKPQPPPQPH TQPPPIASMP PPPHPFAHHQ HHHHHQHQQQ QQQQPPAGSA NPAAPMPGGG MRLSFDQMVG
101: KPPGEHHPHQ HQHPHQHQHQ HPHQHHPPGP MLYAAPPPHA VAPPPGSNAL GMGDLMRKKR GRPRKYAPDG SMALALAPLS SASGGAAPPP PPGQQHGFSI
201: SSPPSDPNAK RRGRPPGSGK KKQFEALGSW GISFTPHILS VKAGEDVASK IMSFSQQGPR TVCILSANGA ISNVTLRQPA TSGGLVTYEG RFEIISLSGS
301: FLLAEDGDTR SRTGGLSVAL AGSDGRVLGG CVAGQLTAAT PVQVVVASFI AEGKKSKPAE PRKVEPMSAP PQMATYVPAP VASPPSEGTS SASSDDSGSP
401: INHGGMPYNH SGGQQHQQQH MPPAYASGGW SLSAHHQNNN RHDADMKMMS N
101: KPPGEHHPHQ HQHPHQHQHQ HPHQHHPPGP MLYAAPPPHA VAPPPGSNAL GMGDLMRKKR GRPRKYAPDG SMALALAPLS SASGGAAPPP PPGQQHGFSI
201: SSPPSDPNAK RRGRPPGSGK KKQFEALGSW GISFTPHILS VKAGEDVASK IMSFSQQGPR TVCILSANGA ISNVTLRQPA TSGGLVTYEG RFEIISLSGS
301: FLLAEDGDTR SRTGGLSVAL AGSDGRVLGG CVAGQLTAAT PVQVVVASFI AEGKKSKPAE PRKVEPMSAP PQMATYVPAP VASPPSEGTS SASSDDSGSP
401: INHGGMPYNH SGGQQHQQQH MPPAYASGGW SLSAHHQNNN RHDADMKMMS N
001: MSGSETGLMA ATRESMQFTM ALHQQQQHSQ AQPQQSQNRP LSFGGDDGTA LYKQPMRSVS PPQQYQPNSA GENSVLNMNL PGGESGGMTG TGSEPVKKRR
101: GRPRKYGPDS GEMSLGLNPG APSFTVSQPS SGGDGGEKKR GRPPGSSSKR LKLQALGSTG IGFTPHVLTV LAGEDVSSKI MALTHNGPRA VCVLSANGAI
201: SNVTLRQSAT SGGTVTYEGR FEILSLSGSF HLLENNGQRS RTGGLSVSLS SPDGNVLGGS VAGLLIAASP VQIVVGSFLP DGEKEPKQHV GQMGLSSPVL
301: PRVAPTQVLM TPSSPQSRGT MSESSCGGGH GSPIHQSTGG PYNNTINMPW K
101: GRPRKYGPDS GEMSLGLNPG APSFTVSQPS SGGDGGEKKR GRPPGSSSKR LKLQALGSTG IGFTPHVLTV LAGEDVSSKI MALTHNGPRA VCVLSANGAI
201: SNVTLRQSAT SGGTVTYEGR FEILSLSGSF HLLENNGQRS RTGGLSVSLS SPDGNVLGGS VAGLLIAASP VQIVVGSFLP DGEKEPKQHV GQMGLSSPVL
301: PRVAPTQVLM TPSSPQSRGT MSESSCGGGH GSPIHQSTGG PYNNTINMPW K
Arabidopsis Description
AHL10AT-hook motif nuclear-localized protein 10 [Source:UniProtKB/Swiss-Prot;Acc:O22812]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.