Factsheet for Os10t0572900-02

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
YLoc:	plastid

nucleus: 18022940
nucleus: 26035336

msms PMID: 18022940 doi

F Tan, G Li, BR Chitteti, Z Peng

Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0831200-01
Os02t0824300-01
Os04t0683900-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17950.1	Os02t0824300-01	AT1G63470.1	21798944
AT4G17950.1	Os04t0683900-01	AT1G63470.1	21798944
AT4G17950.1	Os01t0831200-01	AT3G51780.1	21798944
AT4G17950.1	Os02t0824300-01	AT3G61310.1	21798944
AT4G17950.1	Os04t0683900-01	AT3G61310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P03370_001	Banana	mitochondrion, plastid	54.18	71.58
KXG38867	Sorghum	plastid	93.23	55.32
Zm00001d030053_P003	Maize	plastid	91.63	55.16
Zm00001d047042_P004	Maize	cytosol, nucleus, plasma membrane	91.24	53.38
TraesCS1B01G206100.2	Wheat	nucleus	94.42	52.55
TraesCS1A01G190900.1	Wheat	nucleus	94.42	52.2
TraesCS1D01G194900.2	Wheat	nucleus	94.02	51.98
HORVU1Hr1G049980.12	Barley	nucleus	94.42	51.08
GSMUA_Achr4P27240_001	Banana	cytosol, extracellular, nucleus, plastid	67.33	48.01
GSMUA_Achr2P09840_001	Banana	nucleus	66.53	46.78
Solyc04g053090.1.1	Tomato	plastid	30.68	45.56
Os04t0589900-01	Rice	nucleus	64.94	43.01
Solyc04g053100.1.1	Tomato	plastid	27.89	42.17
VIT_02s0012g00900.t01	Wine grape	nucleus	58.96	41.93
PGSC0003DMT400045147	Potato	plastid	54.18	41.21
Os09t0491708-01	Rice	nucleus	54.18	37.88
Os08t0512400-02	Rice	nucleus	51.79	36.72
CDY01503	Canola	cytosol	37.05	35.91
KRH58200	Soybean	nucleus	50.6	35.08
Solyc08g077030.2.1	Tomato	nucleus	54.18	33.25
PGSC0003DMT400052826	Potato	nucleus	47.01	32.78
KRH04337	Soybean	nucleus	46.22	32.58
KRH28286	Soybean	plastid	43.03	31.86
KRH77206	Soybean	nucleus	42.63	31.66
Os11t0149100-01	Rice	cytosol, nucleus, peroxisome	43.82	30.05
Os06t0326000-01	Rice	nucleus	44.62	29.63
Os08t0118000-01	Rice	nucleus	43.03	29.03
AT5G46640.1	Thale cress	nucleus	44.62	29.02
CDY68252	Canola	nucleus	33.86	28.62
Os12t0147000-00	Rice	nucleus	43.43	28.61
CDY03203	Canola	nucleus	40.24	28.21
Solyc08g006950.2.1	Tomato	nucleus	43.03	27.62
Os02t0125200-00	Rice	mitochondrion	40.24	27.52
CDX78814	Canola	nucleus	44.62	27.52
Bra017536.1-P	Field mustard	nucleus	38.65	27.48
CDY35172	Canola	nucleus	38.65	27.48
CDY41027	Canola	cytosol	29.08	27.44
Bra021027.1-P	Field mustard	nucleus	44.62	27.32
CDY26694	Canola	cytosol, plastid	28.29	27.1
Bra025718.1-P	Field mustard	nucleus, plastid	32.67	26.97
Bra025717.1-P	Field mustard	nucleus	32.27	26.73
CDY26692	Canola	nucleus	32.27	26.73
CDY44500	Canola	nucleus	44.62	26.67
CDY01506	Canola	nucleus	31.87	26.58
CDY26691	Canola	cytosol, plastid	32.67	26.37
CDY41028	Canola	nucleus, plastid	25.9	26.21
AT4G17950.1	Thale cress	nucleus	45.82	26.2
Bra025716.1-P	Field mustard	nucleus	27.89	26.02
CDY08882	Canola	nucleus	45.02	25.98
CDY26693	Canola	plastid	27.89	25.93
CDX76549	Canola	nucleus	44.22	25.23
Os02t0824300-01	Rice	nucleus	39.04	24.87
Bra013270.1-P	Field mustard	nucleus	40.64	23.94
Os04t0683900-01	Rice	nucleus	34.26	20.53

Protein Annotations

EnsemblPlants:Os10t0572900-02	EnsemblPlantsGene:Os10g0572900	Gene3D:3.30.1330.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:IPR005175	InterPro:PPC_dom	PANTHER:PTHR31500	PANTHER:PTHR31500:SF25	PFAM:PF03479
PFscan:PS51742	ProteinID:BAF27304.1	ProteinID:BAT12169.1	SEG:seg	SUPFAM:SSF117856	UniParc:UPI0000DD9AA5
UniProt:Q0IVG1	MapMan:35.1	:	:	:	:

Description

Similar to AT-hook protein 1. (Os10t0572900-01);Protein of unknown function DUF296 domain containing protein. (Os10t0572900-02);Similar to AT-hook protein 1. (Os10t0572900-03)

Coordinates

chr10:-:22741649..22744775

Molecular Weight (calculated)

26164.9 Da

IEP (calculated)

9.489

GRAVY (calculated)

-0.401

Length

251 amino acids

Sequence
(BLAST)

001: SSPASDPNAK RRGRPPGSGK KKQFEALGSW GIAFTPHILT VKAGEDVASK IMAFSQQGPR TVCILSANGA ISNVTLRQPA TSGGLVTYEG RFEIISLSGS
101: FLLAEDGDTR SRTGGLSVAL AGSDGRVLGG CVAGMLMAAT PVQVVVASFI AEGKKSKPVE TRKVEPMSAP PQMATYVPAP VASPPSEGTS SGSSDDSGSP
201: INHSGMPYNH SGQQQQHQQH QHMPPAYASG GWSLSAHHQN RHDSDMKMMS N

Best Arabidopsis Sequence Match ( AT4G17950.1 )
(BLAST)

001: MDSREIHHQQ QQQQQQQQQQ QQQQQHLQQQ QQPPPGMLMS HHNSYNRNPN AAAAVLMGHN TSTSQAMHQR LPFGGSMSPH QPQQHQYHHP QPQQQIDQKT
101: LESLGFDGSP SSVAATQQHS MRFGIDHQQV KKKRGRPRKY AADGGGGGGG GSNIALGLAP TSPLPSASNS YGGGNEGGGG GDSAGANANS SDPPAKRNRG
201: RPPGSGKKQL DALGGTGGVG FTPHVIEVKT GEDIATKILA FTNQGPRAIC ILSATGAVTN VMLRQANNSN PTGTVKYEGR FEIISLSGSF LNSESNGTVT
301: KTGNLSVSLA GHEGRIVGGC VDGMLVAGSQ VQVIVGSFVP DGRKQKQSAG RAQNTPEPAS APANMLSFGG VGGPGSPRSQ GQQHSSESSE ENESNSPLHR
401: RSNNNNSNNH GIFGNSTPQP LHQIPMQMYQ NLWPGNSPQ

Arabidopsis Description

AHL13AT-hook motif nuclear-localized protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q940I0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.