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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • vacuole 1
  • plastid 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus, plastid, vacuole
BaCelLo:nucleus
EpiLoc:vacuole
iPSORT:plastid
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:plastid
nucleus: 19621931
msms PMID: 19621931 doi
T Aki, S Yanagisawa
Department of Applied Biological Chemistry, The University of Tokyo, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
OQU76344 Sorghum nucleus 49.74 51.93
Zm00001d037425_P001 Maize nucleus 47.88 50.7
GSMUA_Achr3P03710_001 Banana nucleus 47.09 48.77
GSMUA_Achr6P03420_001 Banana nucleus 44.44 46.67
CDX84679 Canola nucleus 32.28 46.56
VIT_18s0122g00700.t01 Wine grape nucleus 43.39 46.46
Bra022946.1-P Field mustard nucleus 32.01 46.18
CDX79537 Canola mitochondrion, nucleus, plastid 32.01 46.18
Os09t0491708-01 Rice nucleus 42.86 45.13
Os10t0572900-02 Rice nucleus 29.63 44.62
Os08t0512400-02 Rice nucleus 40.74 43.5
GSMUA_Achr9P12360_001 Banana extracellular, vacuole 46.83 43.49
Bra021865.1-P Field mustard nucleus 38.62 41.71
AT2G33620.2 Thale cress nucleus 38.1 41.03
PGSC0003DMT400075370 Potato nucleus 38.62 40.78
Solyc12g094710.1.1 Tomato nucleus 37.57 39.78
CDY37704 Canola nucleus 38.36 38.67
TraesCS7B01G035400.1 Wheat cytosol 20.37 38.5
GSMUA_Achr5P23820_001 Banana cytosol, nucleus, plasma membrane 42.59 38.24
TraesCS7A01G134300.1 Wheat cytosol 19.58 37.56
KRH60876 Soybean nucleus 34.92 36.97
CDY23720 Canola extracellular, plasma membrane, vacuole 38.89 36.93
KRH51558 Soybean nucleus 34.39 36.62
Os04t0589900-01 Rice nucleus 34.13 34.04
TraesCS7D01G133700.1 Wheat cytosol 20.63 33.91
HORVU7Hr1G027950.1 Barley extracellular, mitochondrion, plasma membrane 21.16 33.76
TraesCS7D01G134100.1 Wheat nucleus 28.84 30.11
Os08t0118000-01 Rice nucleus 29.63 30.11
TraesCS7B01G035900.1 Wheat nucleus 28.57 29.75
Os11t0149100-01 Rice cytosol, nucleus, peroxisome 28.31 29.23
Os12t0147000-00 Rice nucleus 28.84 28.61
HORVU7Hr1G028110.15 Barley plasma membrane 28.04 28.57
Os02t0824300-01 Rice nucleus 29.63 28.43
Solyc12g019430.1.1 Tomato cytosol, plastid, vacuole 13.76 27.08
Os02t0125200-00 Rice mitochondrion 25.66 26.43
PGSC0003DMT400075372 Potato cytosol, nucleus, peroxisome 22.75 26.38
Os04t0683900-01 Rice nucleus 26.45 23.87
Protein Annotations
Gene3D:3.30.1330.80MapMan:35.1EntrezGene:4340908InterPro:AT_hook_DNA-bd_motifProteinID:BAD33241.1ProteinID:BAF19441.1
ProteinID:BAS97529.1GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488InterPro:IPR005175
EnsemblPlantsGene:Os06g0326000EnsemblPlants:Os06t0326000-01PFAM:PF03479InterPro:PPC_domPFscan:PS51742PANTHER:PTHR31500
PANTHER:PTHR31500:SF0UniProt:Q69T83SMART:SM00384SUPFAM:SSF117856UniParc:UPI00003FF33BRefSeq:XP_015641570.1
SEG:seg:::::
Description
Protein of unknown function DUF296 domain containing protein. (Os06t0326000-01)
Coordinates
chr6:-:12758542..12763661
Molecular Weight (calculated)
37452.3 Da
IEP (calculated)
11.058
GRAVY (calculated)
-0.224
Length
378 amino acids
Sequence
(BLAST)
001: MQGGAMSAAA TATASEAAAY GGVGMSKSGA LQPQPPHGAA AAVRLAYTHD GIAVYKHTPP PPVYQTPAAV AAPSPPVRGN GGAPASAEQH KRKRGRPRKY
101: AVTDVPLAVV PPSPPKAAAA AGASAAQSPA TPTLPPGFSS GLAAYGGAAA SQPAPRQAPP ASGRVLPHKK RGRPPGSGNK QQQRPQHKKA AAPGSSVIGL
201: KPSVITVQVG EDVVSRVMSF TKNGWAVCVL SANGAVSNMT LRQAGSSGAT TVNYEGHFEI LSLSGSYLLS ESVGLSSRAG GLSVSLAGPD GRVLGGGVAG
301: PLNAATPVQV VIGSFLADVK KGHKQAMPSG APYPGVSTPT SRGTPSGSSG GPGSPLNQSA SGSFNTSNQQ ALADFPWR
Best Arabidopsis Sequence Match ( AT2G33620.1 )
(BLAST)
001: MSGSETGLMA ATRESMQFTM ALHQQQQHSQ AQPQQSQNRP LSFGGDDGTA LYKQPMRSVS PPQQYQPNSA GENSVLNMNL PGGESGGMTG TGSEPVKKRR
101: GRPRKYGPDS GEMSLGLNPG APSFTVSQPS SGGDGGEKKR GRPPGSSSKR LKLQALGSTG IGFTPHVLTV LAGEDVSSKI MALTHNGPRA VCVLSANGAI
201: SNVTLRQSAT SGGTVTYEGR FEILSLSGSF HLLENNGQRS RTGGLSVSLS SPDGNVLGGS VAGLLIAASP VQIVVGSFLP DGEKEPKQHV GQMGLSSPVL
301: PRVAPTQVLM TPSSPQSRGT MSESSCGGGH GSPIHQSTGG PYNNTINMPW K
Arabidopsis Description
AHL10AT-hook motif nuclear-localized protein 10 [Source:UniProtKB/Swiss-Prot;Acc:O22812]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.