Factsheet for Os04t0589900-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0831200-01
Os02t0824300-01
Os04t0683900-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17950.1	Os02t0824300-01	AT1G63470.1	21798944
AT4G17950.1	Os04t0683900-01	AT1G63470.1	21798944
AT4G17950.1	Os01t0831200-01	AT3G51780.1	21798944
AT4G17950.1	Os02t0824300-01	AT3G61310.1	21798944
AT4G17950.1	Os04t0683900-01	AT3G61310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU82226	Sorghum	plastid	77.57	84.73
HORVU2Hr1G105800.13	Barley	cytosol, vacuole	65.44	80.78
HORVU7Hr1G065300.2	Barley	mitochondrion, plastid	38.26	76.72
Zm00001d026036_P001	Maize	nucleus	81.0	76.37
TraesCS2B01G470900.1	Wheat	cytosol, nucleus, peroxisome, plastid	82.32	75.73
TraesCS2A01G449500.1	Wheat	plastid	81.53	75.37
TraesCS2D01G448900.1	Wheat	cytosol, nucleus, peroxisome, plastid	81.79	75.24
Os10t0572900-02	Rice	nucleus	43.01	64.94
GSMUA_Achr5P03370_001	Banana	mitochondrion, plastid	31.4	62.63
GSMUA_Achr4P27240_001	Banana	cytosol, extracellular, nucleus, plastid	48.02	51.7
VIT_02s0012g00900.t01	Wine grape	nucleus	48.02	51.56
GSMUA_Achr2P09840_001	Banana	nucleus	47.23	50.14
Solyc04g053090.1.1	Tomato	plastid	20.84	46.75
PGSC0003DMT400045147	Potato	plastid	40.37	46.36
Os08t0512400-02	Rice	nucleus	42.74	45.76
Os09t0491708-01	Rice	nucleus	43.01	45.4
KRH58200	Soybean	nucleus	41.42	43.37
Solyc04g053100.1.1	Tomato	plastid	18.73	42.77
KRH04337	Soybean	nucleus	39.31	41.85
KRH77206	Soybean	nucleus	36.68	41.12
KRH28286	Soybean	plastid	36.68	41.0
CDY01503	Canola	cytosol	27.44	40.15
Solyc08g077030.2.1	Tomato	nucleus	42.74	39.61
PGSC0003DMT400052826	Potato	nucleus	36.41	38.33
AT5G46640.1	Thale cress	nucleus	37.47	36.79
CDX78814	Canola	nucleus	38.26	35.63
Os11t0149100-01	Rice	cytosol, nucleus, peroxisome	34.3	35.52
CDY41027	Canola	cytosol	24.8	35.34
CDY41028	Canola	nucleus, plastid	22.96	35.08
Os02t0824300-01	Rice	nucleus	36.15	34.77
CDY68252	Canola	nucleus	27.18	34.68
CDY03203	Canola	nucleus	32.72	34.64
Bra021027.1-P	Field mustard	nucleus	37.47	34.63
Bra025716.1-P	Field mustard	nucleus	24.54	34.57
CDY26693	Canola	plastid	24.54	34.44
CDY44500	Canola	nucleus	37.99	34.29
Bra017536.1-P	Field mustard	nucleus	31.93	34.28
CDY35172	Canola	nucleus	31.93	34.28
CDY01506	Canola	nucleus	27.18	34.22
Os06t0326000-01	Rice	nucleus	34.04	34.13
CDX76549	Canola	nucleus	39.58	34.09
CDY08882	Canola	nucleus	39.05	34.02
Bra025717.1-P	Field mustard	nucleus	27.18	33.99
CDY26692	Canola	nucleus	27.18	33.99
Os08t0118000-01	Rice	nucleus	32.98	33.6
CDY26694	Canola	cytosol, plastid	23.22	33.59
AT4G17950.1	Thale cress	nucleus	38.79	33.49
Solyc08g006950.2.1	Tomato	nucleus	34.04	32.99
Os12t0147000-00	Rice	nucleus	32.98	32.81
CDY26691	Canola	cytosol, plastid	26.39	32.15
Bra013270.1-P	Field mustard	nucleus	35.62	31.69
Bra025718.1-P	Field mustard	nucleus, plastid	25.33	31.58
Os04t0683900-01	Rice	nucleus	31.93	28.88
Os02t0125200-00	Rice	mitochondrion	26.91	27.79

Protein Annotations

EMBL:AB110206	EMBL:AK070449	EnsemblPlants:Os04t0589900-01	EnsemblPlantsGene:Os04g0589900	EntrezGene:4336816	Gene3D:3.30.1330.80
InterPro:IPR005175	InterPro:PPC_dom	PANTHER:PTHR31500	PANTHER:PTHR31500:SF25	PFAM:PF03479	PFscan:PS51742
ProteinID:BAF15616.1	ProteinID:BAS90738.1	ProteinID:CAE04865.2	RefSeq:XP_015635735.1	SEG:seg	SUPFAM:SSF117856
UniParc:UPI00001B19E5	UniProt:Q7XLZ6	MapMan:35.1	:	:	:

Description

OsAHP1Protein of unknown function DUF296 domain containing protein. (Os04t0589900-01);Similar to AT-hook protein 1. (Os04t0589900-02);Protein of unknown function DUF296 domain containing protein. (Os04t0589900-03)

Coordinates

chr4:-:29814059..29818102

Molecular Weight (calculated)

38243.0 Da

IEP (calculated)

9.358

GRAVY (calculated)

-0.479

Length

379 amino acids

Sequence
(BLAST)

001: MDGREQQQQP RVSSPPPAGG GVMMPQHPYG AAPAMPPGSA NVMHGVPLSF NPMASPTASS PMKPADMSGT MYRTDPVVQG MQQQPGSGGG GTAVGGGELV
101: KKKRGRPRKY GPDGNIGLGL KPAAAAGTEA GGPSGGAGSN SNPDGKRRGR PPGSGKKKQL DALGSSGTSF TPHIITVKPN EDVASKIMAF SQQGPRTTCI
201: ISANGALCTA TLRQPATSGG IVTYEGHFDI LSLSGSFLLA EDGDTRSRTG GLSVALAGSD GRIVGGCVAG MLMAATPVQV VVGSFIAEGK KGKEEHLKRE
301: PTSAPTPNHA AGFGAATAAS PPSDGSSSDH SDDPGSPMGP NGSTFNNSGH PMHSSYAPVS WSLSGNQGRY DPDLKMMTD

Best Arabidopsis Sequence Match ( AT4G17950.1 )
(BLAST)

001: MDSREIHHQQ QQQQQQQQQQ QQQQQHLQQQ QQPPPGMLMS HHNSYNRNPN AAAAVLMGHN TSTSQAMHQR LPFGGSMSPH QPQQHQYHHP QPQQQIDQKT
101: LESLGFDGSP SSVAATQQHS MRFGIDHQQV KKKRGRPRKY AADGGGGGGG GSNIALGLAP TSPLPSASNS YGGGNEGGGG GDSAGANANS SDPPAKRNRG
201: RPPGSGKKQL DALGGTGGVG FTPHVIEVKT GEDIATKILA FTNQGPRAIC ILSATGAVTN VMLRQANNSN PTGTVKYEGR FEIISLSGSF LNSESNGTVT
301: KTGNLSVSLA GHEGRIVGGC VDGMLVAGSQ VQVIVGSFVP DGRKQKQSAG RAQNTPEPAS APANMLSFGG VGGPGSPRSQ GQQHSSESSE ENESNSPLHR
401: RSNNNNSNNH GIFGNSTPQP LHQIPMQMYQ NLWPGNSPQ

Arabidopsis Description

AHL13AT-hook motif nuclear-localized protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q940I0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.