Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 3
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025717.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY41028 | Canola | nucleus, plastid | 68.32 | 83.47 |
| CDY68252 | Canola | nucleus | 70.3 | 71.72 |
| CDY26691 | Canola | cytosol, plastid | 72.94 | 71.06 |
| CDY26693 | Canola | plastid | 63.04 | 70.74 |
| CDY26694 | Canola | cytosol, plastid | 59.08 | 68.32 |
| CDY41027 | Canola | cytosol | 59.41 | 67.67 |
| CDY01506 | Canola | nucleus | 49.84 | 50.17 |
| CDY01503 | Canola | cytosol | 40.26 | 47.1 |
| CDX78814 | Canola | nucleus | 55.45 | 41.28 |
| CDY44500 | Canola | nucleus | 56.11 | 40.48 |
| CDY08882 | Canola | nucleus | 56.44 | 39.31 |
| CDX76549 | Canola | nucleus | 56.44 | 38.86 |
| AT4G17950.1 | Thale cress | nucleus | 54.13 | 37.36 |
| CDY03203 | Canola | nucleus | 40.92 | 34.64 |
| CDY35172 | Canola | nucleus | 40.26 | 34.56 |
| VIT_02s0012g00900.t01 | Wine grape | nucleus | 37.62 | 32.29 |
| Os10t0572900-02 | Rice | nucleus | 26.73 | 32.27 |
| GSMUA_Achr5P03370_001 | Banana | mitochondrion, plastid | 20.13 | 32.11 |
| CDX84679 | Canola | nucleus | 27.39 | 31.68 |
| CDX79537 | Canola | mitochondrion, nucleus, plastid | 27.39 | 31.68 |
| Solyc04g053090.1.1 | Tomato | plastid | 17.49 | 31.36 |
| Solyc04g053100.1.1 | Tomato | plastid | 16.17 | 29.52 |
| CDY07239 | Canola | plasma membrane | 22.11 | 29.0 |
| HORVU2Hr1G105800.13 | Barley | cytosol, vacuole | 29.37 | 28.99 |
| KRH58200 | Soybean | nucleus | 33.99 | 28.45 |
| GSMUA_Achr4P27240_001 | Banana | cytosol, extracellular, nucleus, plastid | 32.34 | 27.84 |
| KRH04337 | Soybean | nucleus | 32.34 | 27.53 |
| KRH77206 | Soybean | nucleus | 30.69 | 27.51 |
| PGSC0003DMT400052826 | Potato | nucleus | 32.67 | 27.5 |
| KRH28286 | Soybean | plastid | 30.69 | 27.43 |
| CDY48928 | Canola | nucleus | 31.02 | 27.33 |
| Os04t0589900-01 | Rice | nucleus | 33.99 | 27.18 |
| CDX71746 | Canola | nucleus | 30.69 | 27.03 |
| CDY42495 | Canola | nucleus | 30.03 | 26.92 |
| OQU82226 | Sorghum | plastid | 30.69 | 26.8 |
| CDY58791 | Canola | nucleus | 28.71 | 26.52 |
| CDY51561 | Canola | nucleus | 29.7 | 26.47 |
| GSMUA_Achr2P09840_001 | Banana | nucleus | 31.02 | 26.33 |
| CDX89109 | Canola | nucleus | 29.04 | 26.27 |
| CDY07238 | Canola | nucleus | 27.06 | 25.95 |
| HORVU7Hr1G065300.2 | Barley | mitochondrion, plastid | 16.17 | 25.93 |
| CDY37070 | Canola | nucleus | 29.04 | 25.81 |
| CDY27354 | Canola | nucleus | 29.04 | 25.21 |
| CDY47428 | Canola | nucleus | 25.08 | 24.6 |
| Zm00001d026036_P001 | Maize | nucleus | 32.01 | 24.13 |
| TraesCS2A01G449500.1 | Wheat | plastid | 32.34 | 23.9 |
| TraesCS2B01G470900.1 | Wheat | cytosol, nucleus, peroxisome, plastid | 32.34 | 23.79 |
| TraesCS2D01G448900.1 | Wheat | cytosol, nucleus, peroxisome, plastid | 32.01 | 23.54 |
| Solyc08g006950.2.1 | Tomato | nucleus | 30.36 | 23.53 |
| CDY04392 | Canola | nucleus | 20.79 | 23.51 |
| CDY41291 | Canola | nucleus | 23.43 | 23.28 |
| CDY37704 | Canola | nucleus | 28.71 | 23.2 |
| CDX98767 | Canola | nucleus | 25.08 | 23.1 |
| CDX94122 | Canola | cytosol, nucleus, plasma membrane | 24.75 | 22.8 |
| CDX82971 | Canola | plastid | 16.17 | 22.79 |
| Zm00001d030053_P003 | Maize | plastid | 31.35 | 22.78 |
| CDY05594 | Canola | nucleus | 26.73 | 22.75 |
| CDY52506 | Canola | nucleus | 26.07 | 22.64 |
| Zm00001d047042_P004 | Maize | cytosol, nucleus, plasma membrane | 32.01 | 22.61 |
| KXG38867 | Sorghum | plastid | 31.02 | 22.22 |
| CDY64088 | Canola | nucleus, plasma membrane, plastid | 26.4 | 22.1 |
| CDY65362 | Canola | nucleus | 26.73 | 21.77 |
| CDY52477 | Canola | nucleus | 26.4 | 21.74 |
| CDY25500 | Canola | nucleus | 26.4 | 21.62 |
| CDY23720 | Canola | extracellular, plasma membrane, vacuole | 28.38 | 21.61 |
| CDY45364 | Canola | nucleus | 26.07 | 21.53 |
| CDX94457 | Canola | nucleus | 26.73 | 21.43 |
| CDY30005 | Canola | nucleus | 26.73 | 21.26 |
| CDY21122 | Canola | nucleus | 27.06 | 21.24 |
| CDY34355 | Canola | nucleus | 26.4 | 21.16 |
| TraesCS1B01G206100.2 | Wheat | nucleus | 30.69 | 20.62 |
| CDX89422 | Canola | nucleus | 26.07 | 20.57 |
| TraesCS1D01G194900.2 | Wheat | nucleus | 30.69 | 20.48 |
| TraesCS1A01G190900.1 | Wheat | nucleus | 30.69 | 20.48 |
| CDX92693 | Canola | nucleus | 26.4 | 20.2 |
| CDY49703 | Canola | nucleus | 26.4 | 20.05 |
| HORVU1Hr1G049980.12 | Barley | nucleus | 30.69 | 20.04 |
| CDY16785 | Canola | nucleus | 25.74 | 19.9 |
| CDY65097 | Canola | nucleus | 27.39 | 19.81 |
| CDX87241 | Canola | nucleus | 25.41 | 19.69 |
| CDX91598 | Canola | nucleus | 27.06 | 19.57 |
| CDY39751 | Canola | nucleus | 24.42 | 19.37 |
| CDY46385 | Canola | nucleus | 24.42 | 19.37 |
| CDX86910 | Canola | nucleus | 25.41 | 19.3 |
| CDY13231 | Canola | nucleus | 26.07 | 19.27 |
| CDY30710 | Canola | nucleus | 25.41 | 19.2 |
| CDY38874 | Canola | nucleus | 26.73 | 19.15 |
| CDY00271 | Canola | nucleus | 25.41 | 19.11 |
| CDY00488 | Canola | nucleus | 26.73 | 18.88 |
| CDY32624 | Canola | nucleus | 26.07 | 18.63 |
| CDX99902 | Canola | nucleus | 26.73 | 18.45 |
Protein Annotations
| EnsemblPlants:CDY26692 | EnsemblPlantsGene:GSBRNA2T00035588001 | InterPro:IPR005175 | InterPro:PPC_dom | PANTHER:PTHR31500 | PFAM:PF03479 |
| PFscan:PS51742 | ProteinID:CDY26692 | ProteinID:CDY26692.1 | SEG:seg | SUPFAM:SSF117856 | UniParc:UPI000253F532 |
| UniProt:A0A078GNC2 | MapMan:35.1 | : | : | : | : |
Description
BnaA06g13300DBnaA06g13300D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GNC2]
Coordinates
chrLK032193:+:164931..166173
Molecular Weight (calculated)
31190.9 Da
IEP (calculated)
10.708
GRAVY (calculated)
-0.388
Length
303 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSNETHQQQ QNRNAADALA GPTAPSQAMH NRSSVGALSL RKPQPLQGVM LHGSPYSASI EKRGRGRPRK YAPPDVNVNV NVNDGGGANA GPPAKRRGRP
101: LGSRTKQPRK ASGGGGGPLT AHVINVNTGE DIAMKVVAFV NQEPRDVCIL SVSGAVSSAV IQSHNPFGLV KLEGLYVITH MSATFSNTES NGGTVTRTGN
201: LKVSLAGPDF AVLGGFVGGM LVAGSPVQVI VGTFVREGVK LSTDSASAHV LNSDGGGGPG LPQSQGPSES NASKSLGNST PQPPHHLPPQ QSSISKWFMG
301: PSH
101: LGSRTKQPRK ASGGGGGPLT AHVINVNTGE DIAMKVVAFV NQEPRDVCIL SVSGAVSSAV IQSHNPFGLV KLEGLYVITH MSATFSNTES NGGTVTRTGN
201: LKVSLAGPDF AVLGGFVGGM LVAGSPVQVI VGTFVREGVK LSTDSASAHV LNSDGGGGPG LPQSQGPSES NASKSLGNST PQPPHHLPPQ QSSISKWFMG
301: PSH
001: MDSREIHHQQ QQQQQQQQQQ QQQQQHLQQQ QQPPPGMLMS HHNSYNRNPN AAAAVLMGHN TSTSQAMHQR LPFGGSMSPH QPQQHQYHHP QPQQQIDQKT
101: LESLGFDGSP SSVAATQQHS MRFGIDHQQV KKKRGRPRKY AADGGGGGGG GSNIALGLAP TSPLPSASNS YGGGNEGGGG GDSAGANANS SDPPAKRNRG
201: RPPGSGKKQL DALGGTGGVG FTPHVIEVKT GEDIATKILA FTNQGPRAIC ILSATGAVTN VMLRQANNSN PTGTVKYEGR FEIISLSGSF LNSESNGTVT
301: KTGNLSVSLA GHEGRIVGGC VDGMLVAGSQ VQVIVGSFVP DGRKQKQSAG RAQNTPEPAS APANMLSFGG VGGPGSPRSQ GQQHSSESSE ENESNSPLHR
401: RSNNNNSNNH GIFGNSTPQP LHQIPMQMYQ NLWPGNSPQ
101: LESLGFDGSP SSVAATQQHS MRFGIDHQQV KKKRGRPRKY AADGGGGGGG GSNIALGLAP TSPLPSASNS YGGGNEGGGG GDSAGANANS SDPPAKRNRG
201: RPPGSGKKQL DALGGTGGVG FTPHVIEVKT GEDIATKILA FTNQGPRAIC ILSATGAVTN VMLRQANNSN PTGTVKYEGR FEIISLSGSF LNSESNGTVT
301: KTGNLSVSLA GHEGRIVGGC VDGMLVAGSQ VQVIVGSFVP DGRKQKQSAG RAQNTPEPAS APANMLSFGG VGGPGSPRSQ GQQHSSESSE ENESNSPLHR
401: RSNNNNSNNH GIFGNSTPQP LHQIPMQMYQ NLWPGNSPQ
Arabidopsis Description
AHL13AT-hook motif nuclear-localized protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q940I0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.