Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY65097 | Canola | nucleus | 92.84 | 92.84 |
| CDY32624 | Canola | nucleus | 77.57 | 76.65 |
| CDY00488 | Canola | nucleus | 78.28 | 76.46 |
| CDY38874 | Canola | nucleus | 77.09 | 76.36 |
| CDX99902 | Canola | nucleus | 75.66 | 72.21 |
| AT5G51590.1 | Thale cress | nucleus | 71.84 | 71.84 |
| CDX92693 | Canola | nucleus | 56.8 | 60.1 |
| CDY49703 | Canola | nucleus | 56.8 | 59.65 |
| CDX94457 | Canola | nucleus | 53.7 | 59.52 |
| CDX89422 | Canola | nucleus | 52.74 | 57.55 |
| VIT_16s0022g01810.t01 | Wine grape | cytosol, nucleus, peroxisome | 36.99 | 44.16 |
| KRH34345 | Soybean | nucleus | 33.65 | 42.73 |
| Solyc03g007150.2.1 | Tomato | nucleus | 32.94 | 42.46 |
| KRG92455 | Soybean | nucleus | 33.41 | 42.42 |
| PGSC0003DMT400071865 | Potato | plastid | 30.07 | 40.91 |
| CDX84679 | Canola | nucleus | 25.54 | 40.84 |
| CDX79537 | Canola | mitochondrion, nucleus, plastid | 25.54 | 40.84 |
| KRH09229 | Soybean | nucleus | 33.41 | 40.7 |
| PGSC0003DMT400079651 | Potato | nucleus | 32.94 | 39.88 |
| KRH38723 | Soybean | nucleus | 32.7 | 39.83 |
| CDY16785 | Canola | nucleus | 36.99 | 39.54 |
| CDY00271 | Canola | nucleus | 37.95 | 39.45 |
| CDX87241 | Canola | nucleus | 36.75 | 39.39 |
| CDX86910 | Canola | nucleus | 37.47 | 39.35 |
| CDY30710 | Canola | nucleus | 36.99 | 38.65 |
| CDY07239 | Canola | plasma membrane | 21.0 | 38.1 |
| GSMUA_Achr7P06500_001 | Banana | cytosol, plasma membrane, plastid | 30.31 | 37.8 |
| CDY04392 | Canola | nucleus | 24.11 | 37.69 |
| CDY07238 | Canola | nucleus | 28.4 | 37.66 |
| Solyc06g035430.2.1 | Tomato | nucleus | 31.03 | 37.57 |
| CDX98767 | Canola | nucleus | 29.36 | 37.39 |
| CDX94122 | Canola | cytosol, nucleus, plasma membrane | 28.88 | 36.78 |
| GSMUA_Achr1P19840_001 | Banana | nucleus | 33.17 | 36.48 |
| CDY41291 | Canola | nucleus | 26.49 | 36.39 |
| CDY47428 | Canola | nucleus | 26.73 | 36.25 |
| CDX82971 | Canola | plastid | 18.14 | 35.35 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plastid | 31.03 | 34.03 |
| GSMUA_Achr2P03170_001 | Banana | cytosol, peroxisome, plasma membrane | 30.31 | 32.56 |
| Os08t0118000-01 | Rice | nucleus | 28.88 | 32.53 |
| HORVU7Hr1G075040.1 | Barley | plastid | 29.36 | 31.3 |
| TraesCS7B01G215600.1 | Wheat | plastid | 29.36 | 31.22 |
| TraesCS7D01G312100.1 | Wheat | plastid | 29.36 | 30.98 |
| Zm00001d049661_P001 | Maize | cytosol, peroxisome, plasma membrane | 28.88 | 30.95 |
| TraesCS7A01G315100.1 | Wheat | plastid | 29.36 | 30.9 |
| KXG24283 | Sorghum | plastid | 28.88 | 30.79 |
| CDY37704 | Canola | nucleus | 27.45 | 30.67 |
| CDY25500 | Canola | nucleus | 26.25 | 29.73 |
| CDY37070 | Canola | nucleus | 24.11 | 29.62 |
| CDY42495 | Canola | nucleus | 23.87 | 29.59 |
| CDX89109 | Canola | nucleus | 23.63 | 29.55 |
| CDY34355 | Canola | nucleus | 26.25 | 29.1 |
| CDY64088 | Canola | nucleus, plasma membrane, plastid | 25.06 | 29.01 |
| CDY27354 | Canola | nucleus | 24.11 | 28.94 |
| CDY45364 | Canola | nucleus | 25.3 | 28.88 |
| CDY48928 | Canola | nucleus | 23.63 | 28.78 |
| CDX71746 | Canola | nucleus | 23.63 | 28.78 |
| CDY58791 | Canola | nucleus | 22.43 | 28.66 |
| CDY41028 | Canola | nucleus, plastid | 16.95 | 28.63 |
| CDY01503 | Canola | cytosol | 17.66 | 28.57 |
| CDY51561 | Canola | nucleus | 22.91 | 28.24 |
| CDY23720 | Canola | extracellular, plasma membrane, vacuole | 26.73 | 28.14 |
| CDY26692 | Canola | nucleus | 19.57 | 27.06 |
| CDY41027 | Canola | cytosol | 16.71 | 26.32 |
| CDY26694 | Canola | cytosol, plastid | 16.23 | 25.95 |
| CDY26693 | Canola | plastid | 16.71 | 25.93 |
| CDX78814 | Canola | nucleus | 24.82 | 25.55 |
| CDY03203 | Canola | nucleus | 21.48 | 25.14 |
| CDY46385 | Canola | nucleus | 22.91 | 25.13 |
| CDY39751 | Canola | nucleus | 22.91 | 25.13 |
| CDY44500 | Canola | nucleus | 25.06 | 25.0 |
| CDY30005 | Canola | nucleus | 22.67 | 24.93 |
| CDY35172 | Canola | nucleus | 21.0 | 24.93 |
| CDY01506 | Canola | nucleus | 17.9 | 24.92 |
| CDY68252 | Canola | nucleus | 17.66 | 24.92 |
| CDY08882 | Canola | nucleus | 25.54 | 24.6 |
| CDX76549 | Canola | nucleus | 25.78 | 24.55 |
| CDY05594 | Canola | nucleus | 20.76 | 24.44 |
| CDY21122 | Canola | nucleus | 22.43 | 24.35 |
| CDY65362 | Canola | nucleus | 21.48 | 24.19 |
| CDY52477 | Canola | nucleus | 21.24 | 24.18 |
| CDY26691 | Canola | cytosol, plastid | 17.9 | 24.12 |
| CDY52506 | Canola | nucleus | 19.81 | 23.78 |
| CDY13231 | Canola | nucleus | 20.53 | 20.98 |
Protein Annotations
| EnsemblPlants:CDX91598 | EnsemblPlantsGene:GSBRNA2T00153020001 | Gene3D:3.30.1330.80 | InterPro:IPR005175 | InterPro:PPC_dom | PANTHER:PTHR31500 |
| PANTHER:PTHR31500:SF18 | PFAM:PF03479 | PFscan:PS51742 | ProteinID:CDX91598 | ProteinID:CDX91598.1 | SEG:seg |
| SUPFAM:SSF117856 | UniParc:UPI0004EE6040 | MapMan:35.1 | : | : | : |
Description
BnaC02g15620D
Coordinates
chrLK031868:-:827053..829163
Molecular Weight (calculated)
44295.4 Da
IEP (calculated)
5.122
GRAVY (calculated)
-0.581
Length
419 amino acids
Sequence
(BLAST)
(BLAST)
001: MEERQGTSNN NNNNDNKISS FGLKHVAPPP PDGGVYQMGP PRSENPNPFP AGLPSTTAAS ASASAVAATA PENAASPFSL TMPVGNSSSE LKMKKRGRPR
101: KYNPDGLLAV TLSPMPISSS VPLTTVFAPP QRGRGRRRGR ERGQARVEPP NNNNRLTNPQ MFEFNNSSPS PVVGTSEVVG ASFTPHVLTV NVGEDVTMKI
201: MTFSQQGSRA ICILSGNGAV SSVTLRQSLT SGTLTYEGHF EILSLTGSFI TSETGGIRSR AGGMSVSLSG PDGHVFGGGL SGLLLASGPV QVMVGTFEAG
301: KEEPQHQQMQ NQRRERLGIP MTTQDSNISF GGGSAEDPKA RYGHNKPVVI QAPPVSAPPV SLPHEPNTNA AQGYYTNNTA NQIRDLFTSL PGEDDEDFEG
401: EDDDEEFGSD SESDTEVPN
101: KYNPDGLLAV TLSPMPISSS VPLTTVFAPP QRGRGRRRGR ERGQARVEPP NNNNRLTNPQ MFEFNNSSPS PVVGTSEVVG ASFTPHVLTV NVGEDVTMKI
201: MTFSQQGSRA ICILSGNGAV SSVTLRQSLT SGTLTYEGHF EILSLTGSFI TSETGGIRSR AGGMSVSLSG PDGHVFGGGL SGLLLASGPV QVMVGTFEAG
301: KEEPQHQQMQ NQRRERLGIP MTTQDSNISF GGGSAEDPKA RYGHNKPVVI QAPPVSAPPV SLPHEPNTNA AQGYYTNNTA NQIRDLFTSL PGEDDEDFEG
401: EDDDEEFGSD SESDTEVPN
001: MVLNMESTGE AVRSTTGNDG GITVVRSDAP SDFHVAQRSE SSNQSPTSVT PPPPQPSSHH TAPPPLQIST VTTTTTTAAM EGISGGLMKK KRGRPRKYGP
101: DGTVVALSPK PISSAPAPSH LPPPSSHVID FSASEKRSKV KPTNSFNRTK YHHQVENLGE WAPCSVGGNF TPHIITVNTG EDVTMKIISF SQQGPRSICV
201: LSANGVISSV TLRQPDSSGG TLTYEGRFEI LSLSGSFMPN DSGGTRSRTG GMSVSLASPD GRVVGGGLAG LLVAASPVQV VVGSFLAGTD HQDQKPKKNK
301: HDFMLSSPTA AIPISSAADH RTIHSVSSLP VNNNTWQTSL ASDPRNKHTD INVNVT
101: DGTVVALSPK PISSAPAPSH LPPPSSHVID FSASEKRSKV KPTNSFNRTK YHHQVENLGE WAPCSVGGNF TPHIITVNTG EDVTMKIISF SQQGPRSICV
201: LSANGVISSV TLRQPDSSGG TLTYEGRFEI LSLSGSFMPN DSGGTRSRTG GMSVSLASPD GRVVGGGLAG LLVAASPVQV VVGSFLAGTD HQDQKPKKNK
301: HDFMLSSPTA AIPISSAADH RTIHSVSSLP VNNNTWQTSL ASDPRNKHTD INVNVT
Arabidopsis Description
AHL1ATAHL1 [Source:UniProtKB/TrEMBL;Acc:A0A178V7H8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.