Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- plastid 1
- plasma membrane 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d015090_P001 | |
| Zm00001d049661_P001 | nucleus |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG24283 | Sorghum | plastid | 83.12 | 82.7 |
| Os08t0118000-01 | Rice | nucleus | 73.66 | 77.42 |
| TraesCS7B01G215600.1 | Wheat | plastid | 72.89 | 72.33 |
| TraesCS7D01G312100.1 | Wheat | plastid | 73.15 | 72.04 |
| TraesCS7A01G315100.1 | Wheat | plastid | 73.15 | 71.86 |
| HORVU7Hr1G075040.1 | Barley | plastid | 71.87 | 71.5 |
| GSMUA_Achr7P06500_001 | Banana | cytosol, plasma membrane, plastid | 52.43 | 61.01 |
| GSMUA_Achr1P19840_001 | Banana | nucleus | 53.96 | 55.38 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plastid | 52.43 | 53.66 |
| Zm00001d015090_P001 | Maize | extracellular | 36.06 | 53.21 |
| GSMUA_Achr2P03170_001 | Banana | cytosol, peroxisome, plasma membrane | 50.9 | 51.03 |
| KRH34345 | Soybean | nucleus | 38.11 | 45.15 |
| Solyc03g007150.2.1 | Tomato | nucleus | 37.34 | 44.92 |
| KRG92455 | Soybean | nucleus | 37.08 | 43.94 |
| VIT_16s0022g01810.t01 | Wine grape | cytosol, nucleus, peroxisome | 38.87 | 43.3 |
| KRH09229 | Soybean | nucleus | 37.6 | 42.73 |
| KRH38723 | Soybean | nucleus | 37.34 | 42.44 |
| PGSC0003DMT400079651 | Potato | nucleus | 36.57 | 41.33 |
| PGSC0003DMT400071865 | Potato | plastid | 31.97 | 40.58 |
| Solyc06g035430.2.1 | Tomato | nucleus | 33.25 | 37.57 |
| Zm00001d052901_P002 | Maize | nucleus | 33.5 | 35.5 |
| Zm00001d020951_P002 | Maize | cytosol, nucleus, peroxisome, plastid | 30.18 | 35.22 |
| CDX94457 | Canola | nucleus | 32.99 | 34.13 |
| CDX87241 | Canola | nucleus | 34.02 | 34.02 |
| Bra035899.1-P | Field mustard | nucleus | 34.02 | 33.93 |
| CDY16785 | Canola | nucleus | 34.02 | 33.93 |
| CDX86910 | Canola | nucleus | 34.27 | 33.58 |
| AT5G62260.3 | Thale cress | nucleus | 34.53 | 33.42 |
| CDX89422 | Canola | nucleus | 32.48 | 33.07 |
| Zm00001d037425_P001 | Maize | nucleus | 30.18 | 33.05 |
| Bra010070.1-P | Field mustard | nucleus | 34.02 | 33.0 |
| CDY00271 | Canola | nucleus | 34.02 | 33.0 |
| Zm00001d004924_P001 | Maize | cytosol | 30.18 | 32.96 |
| Zm00001d052495_P001 | Maize | cytosol, nucleus, peroxisome | 29.67 | 32.86 |
| Zm00001d026036_P001 | Maize | nucleus | 33.76 | 32.84 |
| Bra019174.1-P | Field mustard | nucleus | 33.25 | 32.83 |
| Bra013886.1-P | Field mustard | nucleus | 31.97 | 32.81 |
| CDY49703 | Canola | nucleus | 33.25 | 32.58 |
| CDX92693 | Canola | nucleus | 32.99 | 32.58 |
| AT4G25320.1 | Thale cress | nucleus | 33.25 | 32.18 |
| AT5G51590.1 | Thale cress | nucleus | 34.27 | 31.98 |
| CDY30710 | Canola | nucleus | 32.48 | 31.67 |
| Bra029271.1-P | Field mustard | cytosol, nucleus, peroxisome | 32.23 | 31.42 |
| Zm00001d030053_P003 | Maize | plastid | 33.25 | 31.18 |
| Zm00001d006034_P003 | Maize | nucleus | 34.27 | 31.16 |
| Zm00001d031481_P001 | Maize | nucleus, peroxisome, plasma membrane, plastid | 32.74 | 31.07 |
| Bra029164.1-P | Field mustard | nucleus | 33.25 | 30.66 |
| CDY38874 | Canola | nucleus | 32.99 | 30.5 |
| Zm00001d047042_P004 | Maize | cytosol, nucleus, plasma membrane | 32.99 | 30.07 |
| CDY00488 | Canola | nucleus | 32.99 | 30.07 |
| CDY32624 | Canola | nucleus | 32.48 | 29.95 |
| Zm00001d018515_P002 | Maize | nucleus | 29.67 | 29.9 |
| Bra028265.1-P | Field mustard | nucleus | 32.74 | 29.84 |
| CDX99902 | Canola | nucleus | 32.74 | 29.16 |
| Bra022555.1-P | Field mustard | nucleus | 31.2 | 29.12 |
| CDX91598 | Canola | nucleus | 30.95 | 28.88 |
| CDY65097 | Canola | nucleus | 30.69 | 28.64 |
| Zm00001d051861_P001 | Maize | endoplasmic reticulum, nucleus, plastid | 27.88 | 27.25 |
| Zm00001d026652_P001 | Maize | plastid | 26.09 | 25.69 |
| Zm00001d001784_P002 | Maize | nucleus | 26.34 | 23.68 |
| Zm00001d020950_P001 | Maize | cytosol | 1.02 | 3.42 |
Protein Annotations
| EMBL:BT039838 | EMBL:EU954585 | EnsemblPlants:Zm00001d049661_P001 | EnsemblPlants:Zm00001d049661_T001 | EnsemblPlantsGene:Zm00001d049661 | EntrezGene:100272943 |
| Gene3D:3.30.1330.80 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | InterPro:IPR005175 |
| InterPro:PPC_dom | PANTHER:PTHR31500 | PANTHER:PTHR31500:SF15 | PFAM:PF03479 | PFscan:PS51742 | ProteinID:AQK51029.1 |
| SEG:seg | SUPFAM:SSF117856 | UniParc:UPI00017B79AD | UniProt:B4FRV0 | MapMan:35.1 | : |
Description
AT-hook motif nuclear-localized protein 1
Coordinates
chr4:-:39030034..39033965
Molecular Weight (calculated)
39823.4 Da
IEP (calculated)
9.630
GRAVY (calculated)
-0.140
Length
391 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAKPGEASV GHAPAPMAAA APVMAAPPLE ETVSFQQPLP APAAAAERGS SSAVLVPPLA TAAGGGAMAL VPVLMKVPKK RGRPRKYGPD GSLIRPLNAT
101: PISASAPLPA AVAPGHYTPA SAVGAAMKRG RGRPLDFAAA AAKQHQQHHH QLYQHQQQQF GFHFDSIGDM GACSAGANFT PHIITVAPGE DVMTKVISFS
201: QQGPRAICVL SANGVISTVT LCQPDSSGGT LTYEGRFELL SLSGSFMPTE NGGTRSRSGG MSVSLASPDG RVVGGGVAGL LVAASPVQIV VGSFLPSYQM
301: EQKNKKPRVD AAPAAAVPQT PPAVPISSTD TRSSEQGQQS SASQRGVNMT VPGGTYGADQ SWVLSPAPQQ PMAEVSRTPS SGDLKMTTSG S
101: PISASAPLPA AVAPGHYTPA SAVGAAMKRG RGRPLDFAAA AAKQHQQHHH QLYQHQQQQF GFHFDSIGDM GACSAGANFT PHIITVAPGE DVMTKVISFS
201: QQGPRAICVL SANGVISTVT LCQPDSSGGT LTYEGRFELL SLSGSFMPTE NGGTRSRSGG MSVSLASPDG RVVGGGVAGL LVAASPVQIV VGSFLPSYQM
301: EQKNKKPRVD AAPAAAVPQT PPAVPISSTD TRSSEQGQQS SASQRGVNMT VPGGTYGADQ SWVLSPAPQQ PMAEVSRTPS SGDLKMTTSG S
001: MVLNMESTGE AVRSTTGNDG GITVVRSDAP SDFHVAQRSE SSNQSPTSVT PPPPQPSSHH TAPPPLQIST VTTTTTTAAM EGISGGLMKK KRGRPRKYGP
101: DGTVVALSPK PISSAPAPSH LPPPSSHVID FSASEKRSKV KPTNSFNRTK YHHQVENLGE WAPCSVGGNF TPHIITVNTG EDVTMKIISF SQQGPRSICV
201: LSANGVISSV TLRQPDSSGG TLTYEGRFEI LSLSGSFMPN DSGGTRSRTG GMSVSLASPD GRVVGGGLAG LLVAASPVQV VVGSFLAGTD HQDQKPKKNK
301: HDFMLSSPTA AIPISSAADH RTIHSVSSLP VNNNTWQTSL ASDPRNKHTD INVNVT
101: DGTVVALSPK PISSAPAPSH LPPPSSHVID FSASEKRSKV KPTNSFNRTK YHHQVENLGE WAPCSVGGNF TPHIITVNTG EDVTMKIISF SQQGPRSICV
201: LSANGVISSV TLRQPDSSGG TLTYEGRFEI LSLSGSFMPN DSGGTRSRTG GMSVSLASPD GRVVGGGLAG LLVAASPVQV VVGSFLAGTD HQDQKPKKNK
301: HDFMLSSPTA AIPISSAADH RTIHSVSSLP VNNNTWQTSL ASDPRNKHTD INVNVT
Arabidopsis Description
AHL1ATAHL1 [Source:UniProtKB/TrEMBL;Acc:A0A178V7H8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.