Factsheet for Bra013886.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra013886.1-P
Bra019174.1-P
Bra022555.1-P	nucleus
Bra028265.1-P	nucleus
Bra029164.1-P	nucleus
Bra033121.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25320.1	Bra033121.1-P	AT4G12080.1	21798944
AT4G25320.1	Bra013886.1-P	AT4G25320.1	23335615
AT4G25320.1	Bra019174.1-P	AT4G25320.1	23335615
AT4G25320.1	Bra022555.1-P	AT5G51590.1	23335615
AT4G25320.1	Bra028265.1-P	AT5G51590.1	23335615
AT4G25320.1	Bra029164.1-P	AT5G51590.1	23335615
AT4G25320.1	Bra022555.1-P	AT5G51590.1	23335615
AT4G25320.1	Bra028265.1-P	AT5G51590.1	23335615
AT4G25320.1	Bra029164.1-P	AT5G51590.1	23335615

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89422	Canola	nucleus	96.59	95.83
CDX94457	Canola	nucleus	94.49	95.24
Bra019174.1-P	Field mustard	nucleus	85.3	82.07
AT4G25320.1	Thale cress	nucleus	81.36	76.73
Bra029164.1-P	Field mustard	nucleus	62.99	56.6
Bra028265.1-P	Field mustard	nucleus	63.25	56.18
Bra022555.1-P	Field mustard	nucleus	59.84	54.42
KRH34345	Soybean	nucleus	38.85	44.85
KRG92455	Soybean	nucleus	38.58	44.55
PGSC0003DMT400071865	Potato	plastid	35.7	44.16
Solyc03g007150.2.1	Tomato	nucleus	36.75	43.08
VIT_16s0022g01810.t01	Wine grape	cytosol, nucleus, peroxisome	39.63	43.02
KRH38723	Soybean	nucleus	37.27	41.28
KRH09229	Soybean	nucleus	37.01	40.99
Solyc06g035430.2.1	Tomato	nucleus	37.01	40.75
Bra022946.1-P	Field mustard	nucleus	27.3	39.69
PGSC0003DMT400079651	Potato	nucleus	35.96	39.6
Bra010070.1-P	Field mustard	nucleus	41.73	39.45
GSMUA_Achr7P06500_001	Banana	cytosol, plasma membrane, plastid	34.65	39.29
Bra035899.1-P	Field mustard	nucleus	40.42	39.29
Bra037321.1-P	Field mustard	nucleus	31.76	38.29
Bra013646.1-P	Field mustard	nucleus	30.18	37.7
Bra019359.1-P	Field mustard	nucleus	32.55	37.69
Bra029271.1-P	Field mustard	cytosol, nucleus, peroxisome	39.63	37.66
Bra033121.1-P	Field mustard	nucleus	30.18	37.1
GSMUA_Achr1P19840_001	Banana	nucleus	35.96	35.96
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	35.96	35.86
Os08t0118000-01	Rice	nucleus	34.38	35.22
GSMUA_Achr2P03170_001	Banana	cytosol, peroxisome, plasma membrane	34.65	33.85
KXG24283	Sorghum	plastid	33.6	32.57
TraesCS7B01G215600.1	Wheat	plastid	33.6	32.49
Zm00001d049661_P001	Maize	cytosol, peroxisome, plasma membrane	32.81	31.97
HORVU7Hr1G075040.1	Barley	plastid	32.81	31.81
TraesCS7D01G312100.1	Wheat	plastid	33.07	31.74
TraesCS7A01G315100.1	Wheat	plastid	33.07	31.66
Bra021865.1-P	Field mustard	nucleus	27.56	30.0
Bra014444.1-P	Field mustard	nucleus	25.46	29.13
Bra039309.1-P	Field mustard	nucleus	25.98	29.03
Bra025511.1-P	Field mustard	nucleus	20.47	28.16
Bra007595.1-P	Field mustard	nucleus	25.2	28.15
Bra003446.1-P	Field mustard	nucleus	24.15	27.14
Bra027642.1-P	Field mustard	nucleus	25.98	25.98
Bra020612.1-P	Field mustard	nucleus	23.88	25.85
Bra027801.1-P	Field mustard	nucleus	25.2	25.6
Bra025717.1-P	Field mustard	nucleus	20.21	25.41
Bra025716.1-P	Field mustard	nucleus	17.85	25.28
Bra009999.1-P	Field mustard	nucleus	24.15	24.73
Bra025718.1-P	Field mustard	nucleus, plastid	19.16	24.01
Bra040133.1-P	Field mustard	nucleus	23.62	23.5
Bra017536.1-P	Field mustard	nucleus	21.52	23.23
Bra021027.1-P	Field mustard	nucleus	24.93	23.17
Bra013270.1-P	Field mustard	nucleus	24.67	22.07

Protein Annotations

EnsemblPlants:Bra013886.1	EnsemblPlants:Bra013886.1-P	EnsemblPlantsGene:Bra013886	Gene3D:3.30.1330.80	InterPro:IPR005175	InterPro:PPC_dom
PANTHER:PTHR31500	PANTHER:PTHR31500:SF18	PFAM:PF03479	PFscan:PS51742	SEG:seg	SUPFAM:SSF117856
UniParc:UPI000254684A	UniProt:M4DBM6	MapMan:35.1	:	:	:

Description

AT4G25320 (E=3e-125) | DNA-binding protein-related

Coordinates

chrA01:+:8241250..8242870

Molecular Weight (calculated)

40710.3 Da

IEP (calculated)

5.005

GRAVY (calculated)

-0.583

Length

381 amino acids

Sequence
(BLAST)

001: MEEREGTNNT TTSLNQAAAA SSDAYPMDPP RPDNPNPFSA PPTTSSVGNA APQFSLTMQA ETASSEQKKK RGRPRKYNPD GTLAVTLSPM PISSSVPLTS
101: GLPPRKRGRG RGRSSQWLKK PEMFQFDRSP VETSFAGVGT AADFVGANFT PHMLTVNAGE DVTMKIMTFS QQGSRAICIL SANGLISNVT LRQTTTSGGT
201: LTYEGRFEIL SLTGLFMQND TGGTRSRAGG MSVCLAGPDG RVFGGGLPGL FLAAGPVQVM VATFIAAQEQ SHLQLAQERR QRFGAQPPSI SFNITAEERK
301: ARFERLNNSV TVPAPTPPSY PHDNTGNAVH SYYTNSVNHV KDPFSSIHGG GEDEGEEDEG DGNELEGEDE EFGESDNEIP S

Best Arabidopsis Sequence Match ( AT4G25320.1 )
(BLAST)

001: MEEREGTNIN NNITSSFGLK QQHEAAASDG GYSMDPPPRP ENPNPFLVPP TTVPAAATVA AAVTENAATP FSLTMPTENT SAEQLKKKRG RPRKYNPDGT
101: LVVTLSPMPI SSSVPLTSEF PPRKRGRGRG KSNRWLKKSQ MFQFDRSPVD TNLAGVGTAD FVGANFTPHV LIVNAGEDVT MKIMTFSQQG SRAICILSAN
201: GPISNVTLRQ SMTSGGTLTY EGRFEILSLT GSFMQNDSGG TRSRAGGMSV CLAGPDGRVF GGGLAGLFLA AGPVQVMVGT FIAGQEQSQL ELAKERRLRF
301: GAQPSSISFN ISAEERKARF ERLNKSVAIP APTTSYTHVN TTNAVHSYYT NSVNHVKDPF SSIPVGGGGG GEVGEEEGEE DDDELEGEDE EFGGDSQSDN
401: EIPS

Arabidopsis Description

AHL3AT-hook motif nuclear-localized protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SB31]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.