CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92455	nucleus
KRH04046
KRH09229	nucleus
KRH34345	nucleus
KRH38723	nucleus
KRH57315

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25320.1	KRH04046	AT4G12080.1	21798944
AT4G25320.1	KRH57315	AT4G12080.1	21798944
AT4G25320.1	KRG92455	AT4G25320.1	23335615
AT4G25320.1	KRH09229	AT4G25320.1	23335615
AT4G25320.1	KRH34345	AT4G25320.1	23335615
AT4G25320.1	KRH38723	AT4G25320.1	23335615
AT4G25320.1	KRG92455	AT5G51590.1	23335615
AT4G25320.1	KRH09229	AT5G51590.1	23335615
AT4G25320.1	KRH34345	AT5G51590.1	23335615
AT4G25320.1	KRH38723	AT5G51590.1	23335615
AT4G25320.1	KRG92455	AT5G51590.1	23335615
AT4G25320.1	KRH09229	AT5G51590.1	23335615
AT4G25320.1	KRH34345	AT5G51590.1	23335615
AT4G25320.1	KRH38723	AT5G51590.1	23335615
AT5G51590.1	KRG92455	AT5G51590.1	23335615
AT5G51590.1	KRH09229	AT5G51590.1	23335615
AT5G51590.1	KRH34345	AT5G51590.1	23335615
AT5G51590.1	KRH38723	AT5G51590.1	23335615

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34345	Soybean	nucleus	96.67	96.67
KRH38723	Soybean	nucleus	70.0	67.15
KRH09229	Soybean	nucleus	69.7	66.86
Solyc03g007150.2.1	Tomato	nucleus	61.52	62.46
VIT_16s0022g01810.t01	Wine grape	cytosol, nucleus, peroxisome	64.55	60.68
PGSC0003DMT400079651	Potato	nucleus	60.0	57.23
PGSC0003DMT400071865	Potato	plastid	52.12	55.84
Solyc06g035430.2.1	Tomato	nucleus	54.55	52.02
KRH57315	Soybean	nucleus	51.52	51.99
KRH04046	Soybean	nucleus	51.82	51.66
KRH00569	Soybean	cytosol, peroxisome, plastid	51.82	50.59
KRH40594	Soybean	nucleus	50.91	49.85
KRH76268	Soybean	cytosol, nucleus, plastid	51.52	49.13
GSMUA_Achr7P06500_001	Banana	cytosol, plasma membrane, plastid	50.0	49.11
KRH65263	Soybean	cytosol, nucleus, plastid	51.21	48.84
GSMUA_Achr1P19840_001	Banana	nucleus	53.33	46.19
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	50.0	43.19
KRH05193	Soybean	plastid	19.09	42.86
GSMUA_Achr2P03170_001	Banana	cytosol, peroxisome, plasma membrane	50.0	42.31
Os08t0118000-01	Rice	nucleus	46.06	40.86
CDX94457	Canola	nucleus	45.45	39.68
CDX89422	Canola	nucleus	45.45	39.06
KXG24283	Sorghum	plastid	46.36	38.93
Bra013886.1-P	Field mustard	nucleus	44.55	38.58
CDX92693	Canola	nucleus	45.45	37.88
Bra019174.1-P	Field mustard	nucleus	45.45	37.88
CDY49703	Canola	nucleus	45.45	37.59
AT4G25320.1	Thale cress	nucleus	45.76	37.38
Zm00001d049661_P001	Maize	cytosol, peroxisome, plasma membrane	43.94	37.08
AT5G51590.1	Thale cress	nucleus	46.97	36.99
TraesCS7B01G215600.1	Wheat	plastid	43.64	36.55
HORVU7Hr1G075040.1	Barley	plastid	43.33	36.39
TraesCS7A01G315100.1	Wheat	plastid	43.64	36.18
CDY00488	Canola	nucleus	46.97	36.13
KRH51558	Soybean	nucleus	38.79	36.06
TraesCS7D01G312100.1	Wheat	plastid	43.33	36.02
Bra035899.1-P	Field mustard	nucleus	42.73	35.97
CDY16785	Canola	nucleus	42.73	35.97
CDY38874	Canola	nucleus	46.06	35.93
Bra028265.1-P	Field mustard	nucleus	46.67	35.9
KRH65066	Soybean	nucleus	36.97	35.88
KRH48165	Soybean	nucleus	36.97	35.88
Bra029164.1-P	Field mustard	nucleus	46.06	35.85
CDX87241	Canola	nucleus	42.42	35.81
KRH00715	Soybean	nucleus	36.97	35.67
KRH40471	Soybean	nucleus	36.67	35.48
CDX86910	Canola	nucleus	42.73	35.34
CDY32624	Canola	nucleus	45.15	35.14
KRH60876	Soybean	nucleus	37.88	35.01
AT5G62260.3	Thale cress	nucleus	42.73	34.9
CDY00271	Canola	nucleus	42.42	34.74
Bra010070.1-P	Field mustard	nucleus	42.42	34.74
CDX99902	Canola	nucleus	46.06	34.62
KRH20019	Soybean	nucleus	39.39	34.3
CDY30710	Canola	nucleus	40.61	33.42
CDX91598	Canola	nucleus	42.42	33.41
Bra029271.1-P	Field mustard	cytosol, nucleus, peroxisome	40.3	33.17
Bra022555.1-P	Field mustard	nucleus	41.82	32.94
CDY65097	Canola	nucleus	41.52	32.7
KRH32644	Soybean	plastid	38.48	32.07
KRH58200	Soybean	nucleus	33.94	30.94
KRH77536	Soybean	nucleus	33.33	30.81
KRH27929	Soybean	nucleus	32.73	30.68
KRH59866	Soybean	nucleus	31.52	29.55
KRH41165	Soybean	nucleus	31.21	29.26
KRH04337	Soybean	nucleus	31.52	29.21
KRH28286	Soybean	plastid	29.7	28.91
KRH68809	Soybean	nucleus	30.0	28.61
KRH77206	Soybean	nucleus	29.09	28.4
KRH25156	Soybean	cytosol	22.12	28.08
KRG97062	Soybean	nucleus	30.3	27.7
KRH30520	Soybean	nucleus	26.97	24.05

Protein Annotations

EMBL:ACUP02012759	EnsemblPlants:KRG92455	EnsemblPlantsGene:GLYMA_20G212200	EntrezGene:100789179	Gene3D:3.30.1330.80	InterPro:IPR005175
InterPro:PPC_dom	PANTHER:PTHR31500	PANTHER:PTHR31500:SF18	PFAM:PF03479	PFscan:PS51742	ProteinID:KRG92455
ProteinID:KRG92455.1	SEG:seg	SUPFAM:SSF117856	UniParc:UPI0001B376BE	UniProt:I1NIC3	MapMan:35.1

Description

hypothetical protein

Coordinates

chr20:+:44872634..44878802

Molecular Weight (calculated)

34645.1 Da

IEP (calculated)

7.049

GRAVY (calculated)

-0.238

Length

330 amino acids

Sequence
(BLAST)

001: MEGRENFGVV VGDEAPESFH VAPRIENNLD FSRATVPAPA PATEGKKKRG RPRKYGPDGK PALGAVTALS PMPISSSIPL TGEFSAWKSG RGRPVESIKK
101: SSFKFEVESP GPVEGIAYSV GANFTPHVLT VNAGEDVTMK IMTFSQQGSR AICILSATGT ISNVTLRQPS SCGGTLTYEG LFEILSLSGS FMPTENGVTR
201: SRSGGMSVSL AGPDGRVMGG GLAGLLVAAG PVQVVVASFL PGHQLEHKTK KQRVEHVSTI SPSPVNLITS EEIKVSFGGV KPIMTPAAFQ EENIASFNNV
301: QDSRNSSADD KDPLPEKESN LSQSNAEAAC

Best Arabidopsis Sequence Match ( AT5G62260.3 )
(BLAST)

001: MEEKGEISPS GVVTVKGDEA LVPRTEFQQN PSFLQFVSPT TVVTPLPPPP APSSAPVPTT VTPGSATAST GSDPTKKKRG RPRKYAPDGS LNPRFLRPTL
101: SPTPISSSIP LSGDYQWKRG KAQQQHQPLE FVKKSHKFEY GSPAPTPPLP GLSCYVGANF TTHQFTVNGG EDVTMKVMPY SQQGSRAICI LSATGSISNV
201: TLGQPTNAGG TLTYEGRFEI LSLSGSFMPT ENGGTKGRAG GMSISLAGPN GNIFGGGLAG MLIAAGPVQV VMGSFIVMHQ AEQNQKKKPR VMEAFAPPQP
301: QAPPQLQQQQ PPTFTITTVN STSPSVNTVE EQKPQAYGGG IVRPMAQMPS SFQNDNSTMN NFTPAYHGYG NMNTGTTHKE EHEDEDGGDD DDDSGDTRSQ
401: SHSG

Arabidopsis Description

AHL6AT-hook motif nuclear-localized protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVB0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.