CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH00715
KRH40471
KRH48165
KRH65066

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63480.1	KRH00715	AT3G61310.1	21798944
AT1G63480.1	KRH40471	AT3G61310.1	21798944
AT1G63480.1	KRH48165	AT3G61310.1	21798944
AT1G63480.1	KRH65066	AT3G61310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27929	Soybean	nucleus	92.72	94.03
KRH05193	Soybean	plastid	28.57	69.39
KRH59866	Soybean	nucleus	65.83	66.76
KRH41165	Soybean	nucleus	63.87	64.77
VIT_02s0025g03580.t01	Wine grape	nucleus	58.54	60.4
PGSC0003DMT400014926	Potato	plastid	51.82	53.62
Solyc08g080960.2.1	Tomato	nucleus	49.86	53.29
Solyc08g008030.2.1	Tomato	nucleus	51.54	53.18
GSMUA_Achr5P20630_001	Banana	nucleus, plasma membrane, plastid	47.34	50.75
KRH40471	Soybean	nucleus	47.9	50.15
KRH00715	Soybean	nucleus	47.9	50.0
CDY25500	Canola	nucleus	51.26	49.46
CDY64088	Canola	nucleus, plasma membrane, plastid	50.14	49.45
AT1G63470.1	Thale cress	nucleus	51.82	48.94
CDY45364	Canola	nucleus	50.14	48.77
Bra027642.1-P	Field mustard	nucleus	51.54	48.29
KRH48165	Soybean	nucleus	45.94	48.24
Bra027801.1-P	Field mustard	nucleus	50.42	48.0
KRH65066	Soybean	nucleus	45.38	47.65
AT1G63480.1	Thale cress	nucleus	47.9	47.37
GSMUA_Achr8P11400_001	Banana	nucleus	45.66	47.11
Bra025511.1-P	Field mustard	nucleus	36.41	46.93
PGSC0003DMT400031843	Potato	plastid	50.42	46.88
CDY34355	Canola	nucleus	49.02	46.3
GSMUA_Achr11P...	Banana	nucleus	46.78	45.01
GSMUA_Achr11P...	Banana	nucleus	47.06	44.8
CDY39751	Canola	nucleus	45.38	42.41
CDY46385	Canola	nucleus	45.1	42.15
GSMUA_Achr1P03070_001	Banana	cytosol, extracellular, nucleus	22.13	40.31
GSMUA_Achr4P30000_001	Banana	nucleus	36.41	39.88
Zm00001d018515_P002	Maize	nucleus	42.3	38.92
HORVU2Hr1G123730.3	Barley	plastid	22.69	38.57
KRH57315	Soybean	nucleus	35.29	38.53
KRH04046	Soybean	nucleus	35.57	38.37
Os02t0824300-01	Rice	nucleus	41.18	37.31
Zm00001d051861_P001	Maize	endoplasmic reticulum, nucleus, plastid	41.18	36.75
OQU85994	Sorghum	nucleus	41.18	36.66
KRH40594	Soybean	nucleus	33.61	35.61
KRH00569	Soybean	cytosol, peroxisome, plastid	33.61	35.5
KRH65263	Soybean	cytosol, nucleus, plastid	33.89	34.97
KRH76268	Soybean	cytosol, nucleus, plastid	33.89	34.97
TraesCS7A01G565900.1	Wheat	nucleus	29.97	34.85
KRH34345	Soybean	nucleus	31.65	34.24
KRG92455	Soybean	nucleus	30.81	33.33
KRH51558	Soybean	nucleus	32.21	32.39
KRH38723	Soybean	nucleus	31.09	32.27
KRH09229	Soybean	nucleus	31.09	32.27
KRH60876	Soybean	nucleus	32.21	32.21
KRH58200	Soybean	nucleus	31.37	30.94
Os04t0683900-01	Rice	nucleus	36.13	30.79
TraesCS2D01G597900.1	Wheat	cytosol, nucleus, plasma membrane, plastid	34.45	30.37
TraesCS6B01G447600.1	Wheat	nucleus	40.06	30.36
TraesCS2B01G604700.1	Wheat	nucleus	34.17	30.27
TraesCS2A01G582300.1	Wheat	nucleus	33.89	29.95
Zm00001d026652_P001	Maize	plastid	32.77	29.47
KXG27470	Sorghum	nucleus	33.61	28.71
KRH04337	Soybean	nucleus	28.57	28.65
KRH20019	Soybean	nucleus	30.25	28.5
TraesCS6A01G403700.1	Wheat	nucleus	42.02	28.25
KRH68809	Soybean	nucleus	26.61	27.46
KRH28286	Soybean	plastid	25.77	27.14
KRG97062	Soybean	nucleus	27.17	26.87
KRH77206	Soybean	nucleus	25.21	26.63
KRH32644	Soybean	plastid	29.13	26.26
Zm00001d001784_P002	Maize	nucleus	30.81	25.29
KRH25156	Soybean	cytosol	17.65	24.23
KRH30520	Soybean	nucleus	24.65	23.78
HORVU7Hr1G122340.3	Barley	nucleus	22.13	22.64

Protein Annotations

EntrezGene:100795781	Gene3D:3.30.1330.80	MapMan:35.1	EMBL:ACUP02000679	InterPro:AT_hook_DNA-bd_motif	EnsemblPlantsGene:GLYMA_01G219600
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	UniProt:I1JA69	InterPro:IPR005175
ProteinID:KRH77535.1	EnsemblPlants:KRH77536	ProteinID:KRH77536	ProteinID:KRH77536.1	PFAM:PF03479	InterPro:PPC_dom
PRINTS:PR00929	PFscan:PS51742	PANTHER:PTHR31500	PANTHER:PTHR31500:SF9	SUPFAM:SSF117856	UniParc:UPI00023375FC
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:54902832..54907304

Molecular Weight (calculated)

36506.7 Da

IEP (calculated)

10.192

GRAVY (calculated)

-0.442

Length

357 amino acids

Sequence
(BLAST)

001: MDGREGMAFP GGSVPYYMQH RGGGVSGSGP GTGTQSGGFQ PPSGFRALSN VSPGSAFKVE SHSYSHSQSQ PQHASFSHGI NIGSSPDGGG GGPSSGEPVK
101: KKRGRPRKYG PDGSVSLMLS PMSATASSTP GSGTSSEKRP RGRPPGSGRK QQLATLGEWM NSSAGLAFSP HVITVGVDED IVAKLLSFAR QRPRAVCILT
201: GTGTISSVTL RQPASTSIGV TYEGRFQILC LSGSYLVAEE GGPHNRTGGM SVSLSSPDGH IIGGGVTRLV ASSPVQVVAC SFVYGGSKPK TKQVTTTTTE
301: DTSSEPQSSD KLASPGSVPP PNQNYTSSPA PGIWPASSRP VEVKSAHAHT GIDLTRG

Best Arabidopsis Sequence Match ( AT1G63470.1 )
(BLAST)

001: MDGREAMAFP GSHSQFYLQR GVFTNLTPSQ VASGLHAPPP PPGMRPMSNP NIHHPQASNP GPPFSMAEHR HSDFGHSIHM GMASPAAVQP TLQLPPPPSE
101: QPMVKKKRGR PRKYVPDGQV SLGLSPMPCV SKKSKDSSSM SDPNAPKRAR GRPPGTGRKQ RLANLGEWMN TSAGLAFAPH VISVGSGEDI VSKVLSFSQK
201: RPRALCIMSG TGTVSSVTLR EPASTTPSLT FEGRFEILSL GGSYLVNEEG GSKSRTGGLS VSLSGPEGHV IGGGIGMLIA ASLVQVVACS FVYGASAKSN
301: NNNNKTIKQE IKPKQEPTNS EMETTPGSAP EAAASTGQHT PQNFPAQGMS GWPVSGSGSG RSLDSSRNPL TDIDLTRG

Arabidopsis Description

AHL5AT-hook motif nuclear-localized protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXB3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.