Factsheet for GSMUA_Achr11P21260_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P03070_001
GSMUA_Achr2P09840_001
GSMUA_Achr4P27240_001
GSMUA_Achr4P30000_001
GSMUA_Achr5P03370_001
GSMUA_Achr5P20630_001
GSMUA_Achr8P11400_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63480.1	GSMUA_Achr11P...	AT3G61310.1	21798944
AT1G63480.1	GSMUA_Achr11P...	AT3G61310.1	21798944
AT1G63480.1	GSMUA_Achr1P03070_001	AT3G61310.1	21798944
AT1G63480.1	GSMUA_Achr4P30000_001	AT3G61310.1	21798944
AT1G63480.1	GSMUA_Achr5P20630_001	AT3G61310.1	21798944
AT1G63480.1	GSMUA_Achr8P11400_001	AT3G61310.1	21798944
AT2G45850.1	GSMUA_Achr2P09840_001	AT4G17950.1	21798944
AT2G45850.1	GSMUA_Achr4P27240_001	AT4G17950.1	21798944
AT2G45850.1	GSMUA_Achr5P03370_001	AT4G17950.1	21798944
AT3G61310.1	GSMUA_Achr11P...	AT2G45850.1	21798944
AT3G61310.1	GSMUA_Achr11P...	AT2G45850.1	21798944
AT3G61310.1	GSMUA_Achr1P03070_001	AT2G45850.1	21798944
AT3G61310.1	GSMUA_Achr4P30000_001	AT2G45850.1	21798944
AT3G61310.1	GSMUA_Achr5P20630_001	AT2G45850.1	21798944
AT3G61310.1	GSMUA_Achr8P11400_001	AT2G45850.1	21798944
AT3G61310.1	GSMUA_Achr11P...	AT3G61310.1	21798944
AT3G61310.1	GSMUA_Achr11P...	AT3G61310.1	21798944
AT3G61310.1	GSMUA_Achr1P03070_001	AT3G61310.1	21798944
AT3G61310.1	GSMUA_Achr4P30000_001	AT3G61310.1	21798944
AT3G61310.1	GSMUA_Achr5P20630_001	AT3G61310.1	21798944
AT3G61310.1	GSMUA_Achr8P11400_001	AT3G61310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P20630_001	Banana	nucleus, plasma membrane, plastid	80.32	89.49
GSMUA_Achr11P...	Banana	nucleus	78.98	78.13
GSMUA_Achr8P11400_001	Banana	nucleus	72.78	78.03
VIT_15s0046g02930.t01	Wine grape	nucleus, plastid	60.38	64.93
KRH00715	Soybean	nucleus	55.8	60.53
KRH40471	Soybean	nucleus	55.53	60.41
KRH65066	Soybean	nucleus	53.91	58.82
KRH48165	Soybean	nucleus	53.64	58.53
VIT_02s0025g03580.t01	Wine grape	nucleus	50.94	54.62
GSMUA_Achr1P03070_001	Banana	cytosol, extracellular, nucleus	28.57	54.08
PGSC0003DMT400000467	Potato	nucleus	49.06	53.69
Solyc01g094460.2.1	Tomato	nucleus	49.06	53.69
KRH05193	Soybean	plastid	20.75	52.38
Bra014444.1-P	Field mustard	nucleus	42.86	47.75
AT2G45850.1	Thale cress	nucleus	44.74	47.7
Solyc08g080960.2.1	Tomato	nucleus	42.86	47.6
KRH27929	Soybean	nucleus	45.01	47.44
CDY37070	Canola	nucleus	43.4	47.21
CDX89109	Canola	nucleus	42.59	47.16
GSMUA_Achr7P20540_001	Banana	nucleus	37.2	47.1
Bra039309.1-P	Field mustard	nucleus	43.13	46.92
KRH77536	Soybean	nucleus	45.01	46.78
CDY42495	Canola	nucleus	42.59	46.75
CDY27354	Canola	nucleus	43.94	46.7
Bra025511.1-P	Field mustard	nucleus	34.77	46.57
Bra007595.1-P	Field mustard	nucleus	42.59	46.33
AT3G61310.1	Thale cress	nucleus, plastid	44.2	46.33
GSMUA_Achr4P30000_001	Banana	nucleus	40.7	46.32
KRH59866	Soybean	nucleus	43.94	46.31
GSMUA_Achr5P03370_001	Banana	mitochondrion, plastid	23.45	45.79
KRH41165	Soybean	nucleus	43.4	45.74
CDY58791	Canola	nucleus	40.16	45.43
CDY48928	Canola	nucleus	42.05	45.35
Solyc08g008030.2.1	Tomato	nucleus	42.05	45.09
PGSC0003DMT400014926	Potato	plastid	41.78	44.93
CDX71746	Canola	nucleus	41.51	44.77
CDY64088	Canola	nucleus, plasma membrane, plastid	43.67	44.75
CDY51561	Canola	nucleus	40.97	44.71
CDY25500	Canola	nucleus	44.2	44.32
CDY45364	Canola	nucleus	42.86	43.32
Bra027642.1-P	Field mustard	nucleus	44.47	43.31
AT1G63470.1	Thale cress	nucleus	43.94	43.12
AT1G63480.1	Thale cress	nucleus	41.78	42.94
Bra003446.1-P	Field mustard	nucleus	39.08	42.77
Bra027801.1-P	Field mustard	nucleus	42.59	42.13
CDY34355	Canola	nucleus	42.86	42.06
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	38.01	41.96
PGSC0003DMT400031843	Potato	plastid	43.4	41.93
GSMUA_Achr3P03710_001	Banana	nucleus	40.16	40.82
HORVU2Hr1G123730.3	Barley	plastid	22.37	39.52
GSMUA_Achr4P27240_001	Banana	cytosol, extracellular, nucleus, plastid	37.2	39.2
GSMUA_Achr7P06500_001	Banana	cytosol, plasma membrane, plastid	35.31	38.99
CDY39751	Canola	nucleus	39.89	38.74
GSMUA_Achr2P20250_001	Banana	cytosol, peroxisome, plastid	38.27	38.69
GSMUA_Achr6P13410_001	Banana	cytosol, nucleus, peroxisome	38.01	38.52
GSMUA_Achr6P03420_001	Banana	nucleus	36.93	38.06
CDY46385	Canola	nucleus	38.81	37.7
GSMUA_Achr9P12360_001	Banana	extracellular, vacuole	40.43	36.85
GSMUA_Achr1P19840_001	Banana	nucleus	37.2	36.22
GSMUA_Achr2P09840_001	Banana	nucleus	34.77	36.13
GSMUA_Achr2P03170_001	Banana	cytosol, peroxisome, plasma membrane	36.66	34.87
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	35.85	34.82
Zm00001d026652_P001	Maize	plastid	34.23	31.99
GSMUA_Achr5P23820_001	Banana	cytosol, nucleus, plasma membrane	36.12	31.83
KXG27470	Sorghum	nucleus	35.04	31.1
TraesCS2B01G604700.1	Wheat	nucleus	33.42	30.77
TraesCS2A01G582300.1	Wheat	nucleus	33.42	30.69
Os04t0683900-01	Rice	nucleus	33.96	30.07
TraesCS2D01G597900.1	Wheat	cytosol, nucleus, plasma membrane, plastid	32.34	29.63
GSMUA_Achr3P03040_001	Banana	nucleus, peroxisome, plasma membrane	38.54	29.55
Zm00001d001784_P002	Maize	nucleus	34.23	29.2

Protein Annotations

EnsemblPlants:GSMUA_Achr11P21260_001	EnsemblPlants:GSMUA_Achr11T21260_001	EnsemblPlantsGene:GSMUA_Achr11G21260_001	Gene3D:3.30.1330.80	InterPro:IPR005175	InterPro:PPC_dom
PANTHER:PTHR31500	PANTHER:PTHR31500:SF9	PFAM:PF03479	PFscan:PS51742	SEG:seg	SUPFAM:SSF117856
UniParc:UPI000296C6A1	UniProt:M0RU56	MapMan:35.1	:	:	:

Description

Putative AT hook motif domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr11G21260_001]

Coordinates

chr11:-:21949712..21954148

Molecular Weight (calculated)

37757.7 Da

IEP (calculated)

10.140

GRAVY (calculated)

-0.275

Length

371 amino acids

Sequence
(BLAST)

001: MDGRDAMAMS GPSSYYMAHR GIPGPGAGSQ PGLHGAAQPG IRSMLNPGTS LAVPSSGLGT AAFQVESPPA VSSHDGGGGD LGEGGSQVEP AKRKRGRPRK
101: YGPDGSVALA LSPVSSSAAP PGTVMASGSG APTQKRRGRP PGTGRKQQLA SLDYLNRGAL SDNRKITMLS RLKKGEWFAG SAGSGFTPHI ITIAEGEDIA
201: AKILSFSQQG PRAVCILSAN GAVSAVTLRQ SATSGGTVTF EGRFEILCLS GSYMLTDNGG SRSRTGGLSI SLSSPDGRVI GGGVAGQLIA ATPVQVIVGS
301: FIYAGSKAKN KAKASNETCA ESELEVGDNQ STPYSALPNQ NLNPSLVMGS WPGLRPLDTR NAHVDIDLTR G

Best Arabidopsis Sequence Match ( AT2G45850.1 )
(BLAST)

001: MDRRDAMGLS GSGSYYIHRG LSGSGPPTFH GSPQQQQGLR HLPNQNSPFG SGSTGFGSPS LHGDPSLATA AGGAGALPHH IGVNMIAPPP PPSETPMKRK
101: RGRPRKYGQD GSVSLALSSS SVSTITPNNS NKRGRGRPPG SGKKQRMASV GELMPSSSGM SFTPHVIAVS IGEDIASKVI AFSQQGPRAI CVLSASGAVS
201: TATLIQPSAS PGAIKYEGRF EILALSTSYI VATDGSFRNR TGNLSVSLAS PDGRVIGGAI GGPLIAASPV QVIVGSFIWA APKIKSKKRE EEASEVVQET
301: DDHHVLDNNN NTISPVPQQQ PNQNLIWSTG SRQMDMRHAH ADIDLMRG

Arabidopsis Description

AHL9AT-hook motif nuclear-localized protein 9 [Source:UniProtKB/Swiss-Prot;Acc:O80834]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.