Factsheet for GSMUA_Achr3P03040_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, plasma membrane

Predictor Summary:

nucleus 2
plasma membrane 2
plastid 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P20250_001	Banana	cytosol, peroxisome, plastid	56.61	74.66
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	41.74	60.12
GSMUA_Achr6P13410_001	Banana	cytosol, nucleus, peroxisome	45.45	60.11
GSMUA_Achr5P03370_001	Banana	mitochondrion, plastid	17.98	45.79
VIT_08s0007g04020.t01	Wine grape	nucleus	34.09	45.71
GSMUA_Achr5P20630_001	Banana	nucleus, plasma membrane, plastid	30.17	43.84
GSMUA_Achr7P20540_001	Banana	nucleus	26.45	43.69
GSMUA_Achr1P03070_001	Banana	cytosol, extracellular, nucleus	17.56	43.37
GSMUA_Achr6P03420_001	Banana	nucleus	30.79	41.39
GSMUA_Achr8P11400_001	Banana	nucleus	29.55	41.33
GSMUA_Achr7P06500_001	Banana	cytosol, plasma membrane, plastid	28.51	41.07
KRH20019	Soybean	nucleus	32.02	40.9
GSMUA_Achr3P03710_001	Banana	nucleus	30.17	40.0
Zm00001d052495_P001	Maize	cytosol, nucleus, peroxisome	28.51	39.09
GSMUA_Achr11P...	Banana	nucleus	29.55	38.54
Os11t0149100-01	Rice	cytosol, nucleus, peroxisome	29.13	38.52
EES15662	Sorghum	cytosol, nucleus, peroxisome	28.31	38.48
GSMUA_Achr4P27240_001	Banana	cytosol, extracellular, nucleus, plastid	27.89	38.35
Zm00001d004924_P001	Maize	cytosol	28.31	38.27
KRH32644	Soybean	plastid	31.2	38.13
GSMUA_Achr4P30000_001	Banana	nucleus	25.62	38.04
GSMUA_Achr11P...	Banana	nucleus	29.34	37.87
EES07975	Sorghum	cytosol	28.31	37.85
GSMUA_Achr1P19840_001	Banana	nucleus	29.55	37.53
Os12t0147000-00	Rice	nucleus	29.55	37.53
GSMUA_Achr9P12360_001	Banana	extracellular, vacuole	31.2	37.1
TraesCS5B01G130400.1	Wheat	plastid	28.1	36.96
TraesCS5D01G138000.1	Wheat	plastid	27.89	36.78
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	28.93	36.65
TraesCS5A01G130500.1	Wheat	plastid	27.89	36.59
GSMUA_Achr2P09840_001	Banana	nucleus	26.86	36.41
TraesCS5B01G129200.1	Wheat	plastid	27.48	36.24
PGSC0003DMT400007056	Potato	nucleus	30.17	35.96
HORVU5Hr1G041290.4	Barley	cytosol, nucleus, peroxisome	27.69	35.92
Solyc09g008940.2.1	Tomato	nucleus	30.37	35.25
GSMUA_Achr2P03170_001	Banana	cytosol, peroxisome, plasma membrane	28.1	34.87
GSMUA_Achr5P23820_001	Banana	cytosol, nucleus, plasma membrane	29.75	34.2
KRH25156	Soybean	cytosol	16.94	31.54
KRH30520	Soybean	nucleus	21.49	28.11

Protein Annotations

EnsemblPlants:GSMUA_Achr3P03040_001	EnsemblPlants:GSMUA_Achr3T03040_001	EnsemblPlantsGene:GSMUA_Achr3G03040_001	Gene3D:3.30.1330.80	InterPro:IPR005175	InterPro:PPC_dom
PANTHER:PTHR31500	PANTHER:PTHR31500:SF14	PFAM:PF03479	PFscan:PS51742	SEG:seg	SUPFAM:SSF117856
UniParc:UPI000295BB93	UniProt:M0SBC2	MapMan:35.1	:	:	:

Description

Whole genome shotgun sequence of line PN40024, scaffold_7.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr3G03040_001]

Coordinates

chr3:+:1978714..1985771

Molecular Weight (calculated)

50584.3 Da

IEP (calculated)

9.974

GRAVY (calculated)

-0.221

Length

484 amino acids

Sequence
(BLAST)

001: MLGFPSMRWH FAKSTLQHPD ECFFQLITWD LRTKTRVAFI SGEKAEQYIS VRIGRWRKLQ WTDGNNQIPT PKALLETTVI QKPHFSLQLA SRQARSHAHK
101: RKRRKSSLSL VSLRLSLLML ACMDGGESTV VSVCAVGDGG GTGDGAGIQA AATEYSAAST PSPSPPAAAF PGVVGGVMGM PVPPPEGAAQ AMGMMGSGGG
201: GSSGADLFGR KKKGRPRKYG PDGMALALSP TSGSPFSPLS SDGKRGRGRP PGSGKYQLLA SLGEWFAYTA GGNFMPHVVT IATGEDIAAR IVSFSQKGTR
301: SICILSANGA VSNVTIRQPG SSGGTLTYEG RFEILSLSGS FTTTENGGVR SRTGGISVSL AGPDGRVIGG GVVGLLLAAS PIQVVVGSFK LNAFKEQKAK
401: PTQQTPFAAV PANTGMLMDA RPISQANPED DCEIPTSLLT GQSHAENSMH NPTPNSTLHA AGWHGLQSSE HDPSPDINIC LQGD

Best Arabidopsis Sequence Match ( AT2G33620.2 )
(BLAST)

001: MSGSETGLMA ATRESMQFTM ALHQQQQHSQ AQPQQSQNRP LSFGGDDGTA LYKQPMRSVS PPQQYQPNSA GENSVLNMNL PGGESGGMTG TGSEPVKKRR
101: GRPRKYGPDS GEMSLGLNPG APSFTVSQPS SGGDGGEKKR GRPPGSSSKR LKLQALGSTG IGFTPHVLTV LAGEDVSSKI MALTHNGPRA VCVLSANGAI
201: SNVTLRQSAT SGGTVTYEGR FEILSLSGSF HLLENNGQRS RTGGLSVSLS SPDGNVLGGS VAGLLIAASP VQIVVGSFLP DGEKEPKQHV GQMGLSSPVL
301: PRVAPTQVLM TPSSPQSRGT MSESSCGGGH GSPIHQSTGG PYNNTINMPW K

Arabidopsis Description

AHL10AT-hook motif nuclear-localized protein 10 [Source:UniProtKB/Swiss-Prot;Acc:O22812]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.