Factsheet for GSMUA_Achr5P20630_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plasma membrane, plastid

Predictor Summary:

nucleus 3
mitochondrion 2
plasma membrane 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P03070_001
GSMUA_Achr2P09840_001
GSMUA_Achr4P27240_001
GSMUA_Achr4P30000_001
GSMUA_Achr5P03370_001
GSMUA_Achr5P20630_001
GSMUA_Achr8P11400_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63480.1	GSMUA_Achr11P...	AT3G61310.1	21798944
AT1G63480.1	GSMUA_Achr11P...	AT3G61310.1	21798944
AT1G63480.1	GSMUA_Achr1P03070_001	AT3G61310.1	21798944
AT1G63480.1	GSMUA_Achr4P30000_001	AT3G61310.1	21798944
AT1G63480.1	GSMUA_Achr5P20630_001	AT3G61310.1	21798944
AT1G63480.1	GSMUA_Achr8P11400_001	AT3G61310.1	21798944
AT2G45850.1	GSMUA_Achr2P09840_001	AT4G17950.1	21798944
AT2G45850.1	GSMUA_Achr4P27240_001	AT4G17950.1	21798944
AT2G45850.1	GSMUA_Achr5P03370_001	AT4G17950.1	21798944
AT3G61310.1	GSMUA_Achr11P...	AT2G45850.1	21798944
AT3G61310.1	GSMUA_Achr11P...	AT2G45850.1	21798944
AT3G61310.1	GSMUA_Achr1P03070_001	AT2G45850.1	21798944
AT3G61310.1	GSMUA_Achr4P30000_001	AT2G45850.1	21798944
AT3G61310.1	GSMUA_Achr5P20630_001	AT2G45850.1	21798944
AT3G61310.1	GSMUA_Achr8P11400_001	AT2G45850.1	21798944
AT3G61310.1	GSMUA_Achr11P...	AT3G61310.1	21798944
AT3G61310.1	GSMUA_Achr11P...	AT3G61310.1	21798944
AT3G61310.1	GSMUA_Achr1P03070_001	AT3G61310.1	21798944
AT3G61310.1	GSMUA_Achr4P30000_001	AT3G61310.1	21798944
AT3G61310.1	GSMUA_Achr5P20630_001	AT3G61310.1	21798944
AT3G61310.1	GSMUA_Achr8P11400_001	AT3G61310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	nucleus	89.49	80.32
GSMUA_Achr11P...	Banana	nucleus	86.79	77.07
GSMUA_Achr8P11400_001	Banana	nucleus	79.88	76.88
VIT_15s0046g02930.t01	Wine grape	nucleus, plastid	69.07	66.67
KRH40471	Soybean	nucleus	62.76	61.29
KRH00715	Soybean	nucleus	62.76	61.11
KRH65066	Soybean	nucleus	61.56	60.29
KRH48165	Soybean	nucleus	60.96	59.71
GSMUA_Achr1P03070_001	Banana	cytosol, extracellular, nucleus	33.03	56.12
VIT_02s0025g03580.t01	Wine grape	nucleus	57.36	55.2
PGSC0003DMT400000467	Potato	nucleus	55.86	54.87
Solyc01g094460.2.1	Tomato	nucleus	55.56	54.57
KRH05193	Soybean	plastid	22.82	51.7
AT2G45850.1	Thale cress	nucleus	51.35	49.14
CDY37070	Canola	nucleus	50.15	48.97
Bra039309.1-P	Field mustard	nucleus	49.85	48.68
CDY27354	Canola	nucleus	50.45	48.14
Solyc08g080960.2.1	Tomato	nucleus	48.05	47.9
Bra014444.1-P	Field mustard	nucleus	47.75	47.75
KRH27929	Soybean	nucleus	50.45	47.73
GSMUA_Achr7P20540_001	Banana	nucleus	41.74	47.44
KRH77536	Soybean	nucleus	50.75	47.34
AT3G61310.1	Thale cress	nucleus, plastid	50.15	47.18
CDY42495	Canola	nucleus	47.75	47.04
CDY58791	Canola	nucleus	46.25	46.95
GSMUA_Achr4P30000_001	Banana	nucleus	45.95	46.93
Bra025511.1-P	Field mustard	nucleus	39.04	46.93
KRH59866	Soybean	nucleus	49.55	46.88
CDX89109	Canola	nucleus	47.15	46.87
Bra007595.1-P	Field mustard	nucleus	47.45	46.33
GSMUA_Achr5P03370_001	Banana	mitochondrion, plastid	26.43	46.32
KRH41165	Soybean	nucleus	48.95	46.31
CDY51561	Canola	nucleus	47.15	46.18
PGSC0003DMT400014926	Potato	plastid	47.75	46.09
Solyc08g008030.2.1	Tomato	nucleus	47.75	45.95
CDY48928	Canola	nucleus	47.15	45.64
CDY64088	Canola	nucleus, plasma membrane, plastid	49.25	45.3
CDY25500	Canola	nucleus	50.15	45.14
CDX71746	Canola	nucleus	46.55	45.06
Bra003446.1-P	Field mustard	nucleus	45.05	44.25
Bra027642.1-P	Field mustard	nucleus	50.45	44.09
CDY45364	Canola	nucleus	48.05	43.6
AT1G63480.1	Thale cress	nucleus	46.85	43.21
AT1G63470.1	Thale cress	nucleus	48.65	42.86
CDY34355	Canola	nucleus	48.65	42.86
Bra027801.1-P	Field mustard	nucleus	48.05	42.67
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	42.64	42.26
PGSC0003DMT400031843	Potato	plastid	48.05	41.67
GSMUA_Achr3P03710_001	Banana	nucleus	45.05	41.1
GSMUA_Achr7P06500_001	Banana	cytosol, plasma membrane, plastid	40.54	40.18
GSMUA_Achr4P27240_001	Banana	cytosol, extracellular, nucleus, plastid	42.34	40.06
HORVU2Hr1G123730.3	Barley	plastid	25.23	40.0
GSMUA_Achr6P13410_001	Banana	cytosol, nucleus, peroxisome	43.54	39.62
CDY39751	Canola	nucleus	45.05	39.27
GSMUA_Achr2P20250_001	Banana	cytosol, peroxisome, plastid	42.94	38.96
GSMUA_Achr6P03420_001	Banana	nucleus	42.04	38.89
CDY46385	Canola	nucleus	44.14	38.48
GSMUA_Achr1P19840_001	Banana	nucleus	43.84	38.32
GSMUA_Achr9P12360_001	Banana	extracellular, vacuole	45.65	37.35
GSMUA_Achr2P09840_001	Banana	nucleus	39.34	36.69
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	41.44	36.13
GSMUA_Achr2P03170_001	Banana	cytosol, peroxisome, plasma membrane	42.04	35.9
GSMUA_Achr5P23820_001	Banana	cytosol, nucleus, plasma membrane	40.84	32.3
Zm00001d026652_P001	Maize	plastid	38.44	32.24
KXG27470	Sorghum	nucleus	39.64	31.58
TraesCS2B01G604700.1	Wheat	nucleus	38.14	31.51
TraesCS2A01G582300.1	Wheat	nucleus	38.14	31.44
Os04t0683900-01	Rice	nucleus	38.74	30.79
TraesCS2D01G597900.1	Wheat	cytosol, nucleus, plasma membrane, plastid	37.24	30.62
GSMUA_Achr3P03040_001	Banana	nucleus, peroxisome, plasma membrane	43.84	30.17
Zm00001d001784_P002	Maize	nucleus	38.74	29.66

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	InterPro:AT_hook_DNA-bd_motif	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSMUA_Achr5G20630_001	EnsemblPlants:GSMUA_Achr5P20630_001
EnsemblPlants:GSMUA_Achr5T20630_001	InterPro:IPR005175	UniProt:M0T092	PFAM:PF03479	InterPro:PPC_dom	PFscan:PS51742
PANTHER:PTHR31500	PANTHER:PTHR31500:SF9	SMART:SM00384	SUPFAM:SSF117856	TMHMM:TMhelix	UniParc:UPI000295EC9C
SEG:seg	:	:	:	:	:

Description

Putative AT hook motif domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G20630_001]

Coordinates

chr5:+:22499681..22504781

Molecular Weight (calculated)

33823.2 Da

IEP (calculated)

10.299

GRAVY (calculated)

-0.161

Length

333 amino acids

Sequence
(BLAST)

001: MDGRDAMAIS GPSSYYMAHR GIPGPGAGSQ PGLHGATQPG VRSMLNPGSS LAVPSSGVSS AAFQVESPPA VEPVKRKRGR PRKYGPDGSV ALALSPISSS
101: ALPDTVIGSG SGAPAQKRGR GRPPGTGRKQ QLASLGEWVA GSAGMGFTPH VITIAEGEDI AAKIMSFSQQ GPRAVCILSA NGAVSAVTLR QSATSGGTVT
201: YEGRFEILCL SGSYMLTDNG GSRSRTGGLS ISLSSPDGRV IGGGVAGLLI AATPVQVIVG SFIYAGSKAK NKAKVSNETG AESELHQVGD KQSTPYSALT
301: SQNLTPSLVM AGWPGSRQLD IRNAHIDIDL TRG

Best Arabidopsis Sequence Match ( AT2G45850.1 )
(BLAST)

001: MDRRDAMGLS GSGSYYIHRG LSGSGPPTFH GSPQQQQGLR HLPNQNSPFG SGSTGFGSPS LHGDPSLATA AGGAGALPHH IGVNMIAPPP PPSETPMKRK
101: RGRPRKYGQD GSVSLALSSS SVSTITPNNS NKRGRGRPPG SGKKQRMASV GELMPSSSGM SFTPHVIAVS IGEDIASKVI AFSQQGPRAI CVLSASGAVS
201: TATLIQPSAS PGAIKYEGRF EILALSTSYI VATDGSFRNR TGNLSVSLAS PDGRVIGGAI GGPLIAASPV QVIVGSFIWA APKIKSKKRE EEASEVVQET
301: DDHHVLDNNN NTISPVPQQQ PNQNLIWSTG SRQMDMRHAH ADIDLMRG

Arabidopsis Description

AHL9AT-hook motif nuclear-localized protein 9 [Source:UniProtKB/Swiss-Prot;Acc:O80834]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.