Factsheet for Solyc01g094460.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
extracellular 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g094460.2.1
Solyc04g053090.1.1
Solyc04g053100.1.1
Solyc08g006950.2.1
Solyc08g007530.2.1
Solyc08g079630.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45850.1	Solyc08g007530.2.1	AT4G12080.1	21798944
AT2G45850.1	Solyc08g079630.2.1	AT4G12080.1	21798944
AT2G45850.1	Solyc04g053090.1.1	AT4G17950.1	21798944
AT2G45850.1	Solyc04g053100.1.1	AT4G17950.1	21798944
AT2G45850.1	Solyc08g006950.2.1	AT4G17950.1	21798944
AT3G61310.1	Solyc01g094460.2.1	AT2G45850.1	21798944
AT3G61310.1	Solyc01g094460.2.1	AT3G61310.1	21798944
AT3G61310.1	Solyc08g007530.2.1	AT4G12080.1	21798944
AT3G61310.1	Solyc08g079630.2.1	AT4G12080.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400000467	Potato	nucleus	97.05	97.05
VIT_15s0046g02930.t01	Wine grape	nucleus, plastid	65.49	64.35
KRH65066	Soybean	nucleus	61.06	60.88
KRH48165	Soybean	nucleus	60.47	60.29
KRH40471	Soybean	nucleus	60.47	60.12
KRH00715	Soybean	nucleus	59.88	59.36
GSMUA_Achr5P20630_001	Banana	nucleus, plasma membrane, plastid	54.57	55.56
GSMUA_Achr11P...	Banana	nucleus	53.69	49.06
GSMUA_Achr8P11400_001	Banana	nucleus	49.85	48.84
GSMUA_Achr11P...	Banana	nucleus	53.69	48.53
Solyc08g080960.2.1	Tomato	nucleus	46.9	47.6
Bra007595.1-P	Field mustard	nucleus	46.9	46.63
CDY48928	Canola	nucleus	47.2	46.51
CDX89109	Canola	nucleus	45.72	46.27
Bra014444.1-P	Field mustard	nucleus	45.43	46.25
AT2G45850.1	Thale cress	nucleus	47.2	45.98
CDX71746	Canola	nucleus	46.61	45.93
CDY42495	Canola	nucleus	45.72	45.86
CDY37070	Canola	nucleus	46.02	45.75
CDY58791	Canola	nucleus	44.25	45.73
Bra039309.1-P	Field mustard	nucleus	45.72	45.45
GSMUA_Achr1P03070_001	Banana	cytosol, extracellular, nucleus	26.25	45.41
CDY27354	Canola	nucleus	46.31	44.99
CDY51561	Canola	nucleus	44.84	44.71
AT3G61310.1	Thale cress	nucleus, plastid	46.31	44.35
GSMUA_Achr4P30000_001	Banana	nucleus	41.89	43.56
Solyc08g008030.2.1	Tomato	nucleus	44.25	43.35
Bra003446.1-P	Field mustard	nucleus	42.18	42.18
TraesCS7A01G565900.1	Wheat	nucleus	36.28	40.07
Os02t0824300-01	Rice	nucleus	46.02	39.59
Solyc01g091370.2.1	Tomato	nucleus	36.87	39.31
Solyc08g079630.2.1	Tomato	nucleus	37.17	39.25
Solyc04g053090.1.1	Tomato	plastid	19.47	39.05
Solyc08g007530.2.1	Tomato	nucleus	37.76	39.02
Zm00001d018515_P002	Maize	nucleus	44.25	38.66
HORVU2Hr1G123730.3	Barley	plastid	23.6	38.1
OQU85994	Sorghum	nucleus	44.25	37.41
Solyc04g053100.1.1	Tomato	plastid	17.7	36.14
Zm00001d051861_P001	Maize	endoplasmic reticulum, nucleus, plastid	42.48	36.0
Solyc03g007150.2.1	Tomato	nucleus	33.04	34.46
Solyc12g094710.1.1	Tomato	nucleus	35.69	33.89
Solyc02g038760.2.1	Tomato	nucleus	32.45	33.74
Solyc02g082300.2.1	Tomato	nucleus, plastid	24.78	32.18
Solyc11g006190.1.1	Tomato	nucleus	31.86	32.05
Solyc08g077030.2.1	Tomato	nucleus	37.46	31.05
TraesCS6B01G447600.1	Wheat	nucleus	42.77	30.79
TraesCS2A01G582300.1	Wheat	nucleus	35.99	30.2
Solyc06g035430.2.1	Tomato	nucleus	30.68	30.06
Os04t0683900-01	Rice	nucleus	36.87	29.83
Zm00001d026652_P001	Maize	plastid	34.51	29.47
TraesCS2D01G597900.1	Wheat	cytosol, nucleus, plasma membrane, plastid	34.81	29.14
KXG27470	Sorghum	nucleus	35.69	28.95
HORVU7Hr1G122340.3	Barley	nucleus	29.79	28.94
TraesCS2B01G604700.1	Wheat	nucleus	34.22	28.78
Solyc12g019430.1.1	Tomato	cytosol, plastid, vacuole	15.93	28.12
TraesCS6A01G403700.1	Wheat	nucleus	43.95	28.06
Solyc09g008940.2.1	Tomato	nucleus	33.04	26.86
Zm00001d001784_P002	Maize	nucleus	34.22	26.67
Solyc08g006950.2.1	Tomato	nucleus	29.79	25.83

Protein Annotations

EnsemblPlants:Solyc01g094460.2.1	EnsemblPlantsGene:Solyc01g094460.2	Gene3D:3.30.1330.80	InterPro:IPR005175	InterPro:PPC_dom	PANTHER:PTHR31500
PANTHER:PTHR31500:SF9	PFAM:PF03479	PFscan:PS51742	SEG:seg	SUPFAM:SSF117856	UniParc:UPI0002768979
UniProt:K4AZI7	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr1:-:85929011..85933607

Molecular Weight (calculated)

34868.6 Da

IEP (calculated)

10.983

GRAVY (calculated)

-0.217

Length

339 amino acids

Sequence
(BLAST)

001: MDRREAMMLP GSSPYYMQRG MSGSGSGNAP GLQGSPSINP SLTPNNIAFQ SSGSGASIPQ TLVMDPSSTL SPRGSIGASS AMPQGEPVRR KRGRPRKYGA
101: QGAMSLALTP PPSTQALSLN PTQKRGRGRP PGSGRKQQLT SFGGWLSNTA GIGFTPHVIM IAVGEDITTK IMSFSQQGPR SICILSATGV ISTVTLRQPS
201: TSGGTVTYEG RFEILCLSGS FLVNESGGSR GRIGSLSVSL ASPDGRVIGG GVGGVLVAAS PIQVIVGSFL CSSSKAKKRA AESVQSAGTS DLQTTDNSVN
301: PADALSNQNL APSSSMGVWP SSRQIDLQTG HIDIDLMRG

Best Arabidopsis Sequence Match ( AT2G45850.1 )
(BLAST)

001: MDRRDAMGLS GSGSYYIHRG LSGSGPPTFH GSPQQQQGLR HLPNQNSPFG SGSTGFGSPS LHGDPSLATA AGGAGALPHH IGVNMIAPPP PPSETPMKRK
101: RGRPRKYGQD GSVSLALSSS SVSTITPNNS NKRGRGRPPG SGKKQRMASV GELMPSSSGM SFTPHVIAVS IGEDIASKVI AFSQQGPRAI CVLSASGAVS
201: TATLIQPSAS PGAIKYEGRF EILALSTSYI VATDGSFRNR TGNLSVSLAS PDGRVIGGAI GGPLIAASPV QVIVGSFIWA APKIKSKKRE EEASEVVQET
301: DDHHVLDNNN NTISPVPQQQ PNQNLIWSTG SRQMDMRHAH ADIDLMRG

Arabidopsis Description

AHL9AT-hook motif nuclear-localized protein 9 [Source:UniProtKB/Swiss-Prot;Acc:O80834]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.