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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • plastid 1
  • cytosol 1
  • mitochondrion 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:nucleus
ChloroP:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:peroxisome
 nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc04g053090.1.1
Solyc04g053100.1.1
Solyc08g006950.2.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G12080.1 Solyc04g053090.1.1 AT4G17950.1 21798944
AT4G12080.1 Solyc04g053100.1.1 AT4G17950.1 21798944
AT4G12080.1 Solyc08g006950.2.1 AT4G17950.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400010017 Potato plastid 97.51 98.12
Solyc08g007530.2.1 Tomato nucleus 76.32 74.7
KRH57315 Soybean nucleus 69.16 67.89
VIT_02s0025g05130.t01 Wine grape cytosol, nucleus, peroxisome 69.16 67.27
KRH04046 Soybean nucleus 68.85 66.77
CDY04392 Canola nucleus 47.35 56.72
CDX94122 Canola cytosol, nucleus, plasma membrane 55.76 54.41
Bra019359.1-P Field mustard nucleus 55.45 54.1
CDY47428 Canola nucleus 52.02 54.05
CDX98767 Canola nucleus 55.14 53.8
AT4G12080.1 Thale cress nucleus 59.5 53.65
Bra033121.1-P Field mustard nucleus 51.09 52.9
Bra013646.1-P Field mustard nucleus 49.53 52.13
CDY41291 Canola nucleus 49.22 51.8
AT4G22770.1 Thale cress nucleus 53.89 51.8
CDX82971 Canola plastid 34.27 51.16
Solyc01g091370.2.1 Tomato nucleus 49.84 50.31
HORVU0Hr1G015180.2 Barley cytosol, extracellular 36.76 50.0
Solyc03g007150.2.1 Tomato nucleus 50.47 49.85
Zm00001d015090_P001 Maize extracellular 40.19 48.68
Solyc06g035430.2.1 Tomato nucleus 44.86 41.62
KXG29351 Sorghum plastid 48.29 41.33
TraesCS6B01G114000.1 Wheat cytosol, nucleus, peroxisome 48.6 39.9
Solyc04g053090.1.1 Tomato plastid 20.25 38.46
TraesCS6A01G083100.1 Wheat cytosol, nucleus, peroxisome 47.35 38.38
TraesCS6D01G076900.1 Wheat nucleus 47.04 38.13
Solyc04g053100.1.1 Tomato plastid 19.31 37.35
Os02t0125200-00 Rice mitochondrion 42.68 37.33
Solyc01g094460.2.1 Tomato nucleus 39.25 37.17
Solyc12g094710.1.1 Tomato nucleus 38.63 34.73
Solyc08g080960.2.1 Tomato nucleus 35.83 34.43
Solyc02g038760.2.1 Tomato nucleus 34.27 33.74
Solyc08g008030.2.1 Tomato nucleus 35.83 33.24
Solyc09g008940.2.1 Tomato nucleus 39.25 30.22
Solyc02g082300.2.1 Tomato nucleus, plastid 23.99 29.5
Solyc11g006190.1.1 Tomato nucleus 30.84 29.38
Solyc12g019430.1.1 Tomato cytosol, plastid, vacuole 16.82 28.12
Solyc08g077030.2.1 Tomato nucleus 35.83 28.12
Solyc08g006950.2.1 Tomato nucleus 32.71 26.85
Protein Annotations
EnsemblPlants:Solyc08g079630.2.1EnsemblPlantsGene:Solyc08g079630.2Gene3D:3.30.1330.80InterPro:IPR005175InterPro:PPC_domPANTHER:PTHR31500
PANTHER:PTHR31500:SF7PFAM:PF03479PFscan:PS51742SEG:segSUPFAM:SSF117856UniParc:UPI000276B2FB
UniProt:K4CNW3MapMan:35.1::::
Description
No Description!
Coordinates
chr8:-:63109702..63114510
Molecular Weight (calculated)
33387.6 Da
IEP (calculated)
9.434
GRAVY (calculated)
-0.186
Length
321 amino acids
Sequence
(BLAST)
001: MEGSNSGVTV VGSDAPSDYH VAARTTENPT TQTVTSQIVV VSPTPAIAVS VGAGAGLTAL SVKKKRGRPR KYAPDGSVNV LSPKPISSSV PSPVIDFSSS
101: EKRGKIRPVG LVSKVHQQPK VDLETPGEWV SCSVGANFTP HIITVNTGED VTMKVISFSQ QGPRAICILS ANGVISSVTL RQPDSSGGTL TYEGRFEILS
201: LTGSFMPSET GGMRNRSGGM SVSLASPDGR VVGGGVAGLL VAASPVQIVI GSFLAGDQHE QRTKKNKPEP IIAAVPLPET EDPYQSSVKQ TTPTSSSFRV
301: DNWSAPDSRN KPAEINVSLP A
Best Arabidopsis Sequence Match ( AT4G12080.1 )
(BLAST)
001: MVLNMESTGE AVRSTTGNDG GITVVRSDAP SDFHVAQRSE SSNQSPTSVT PPPPQPSSHH TAPPPLQIST VTTTTTTAAM EGISGGLMKK KRGRPRKYGP
101: DGTVVALSPK PISSAPAPSH LPPPSSHVID FSASEKRSKV KPTNSFNRTK YHHQVENLGE WAPCSVGGNF TPHIITVNTG EDVTMKIISF SQQGPRSICV
201: LSANGVISSV TLRQPDSSGG TLTYEGRFEI LSLSGSFMPN DSGGTRSRTG GMSVSLASPD GRVVGGGLAG LLVAASPVQV VVGSFLAGTD HQDQKPKKNK
301: HDFMLSSPTA AIPISSAADH RTIHSVSSLP VNNNTWQTSL ASDPRNKHTD INVNVT
Arabidopsis Description
AHL1ATAHL1 [Source:UniProtKB/TrEMBL;Acc:A0A178V7H8]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.