Factsheet for Solyc02g038760.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400059682	Potato	nucleus	89.88	89.88
Solyc12g094710.1.1	Tomato	nucleus	46.32	42.3
Zm00001d020951_P002	Maize	cytosol, nucleus, peroxisome, plastid	41.1	40.0
TraesCS5D01G274900.1	Wheat	plastid	34.97	38.91
Solyc02g082300.2.1	Tomato	nucleus, plastid	29.75	37.16
Solyc04g053090.1.1	Tomato	plastid	19.02	36.69
Solyc08g079630.2.1	Tomato	nucleus	33.74	34.27
Solyc04g053100.1.1	Tomato	plastid	16.87	33.13
Solyc01g091370.2.1	Tomato	nucleus	32.21	33.02
TraesCS5B01G266600.1	Wheat	endoplasmic reticulum, mitochondrion, nucleus, peroxisome	39.88	32.91
Solyc08g007530.2.1	Tomato	nucleus	32.82	32.62
Solyc01g094460.2.1	Tomato	nucleus	33.74	32.45
TraesCS5A01G267000.1	Wheat	nucleus, peroxisome, vacuole	39.26	32.24
Solyc03g007150.2.1	Tomato	nucleus	31.29	31.38
Solyc08g077030.2.1	Tomato	nucleus	39.26	31.3
Solyc08g080960.2.1	Tomato	nucleus	31.6	30.84
Solyc08g008030.2.1	Tomato	nucleus	32.52	30.64
Solyc11g006190.1.1	Tomato	nucleus	31.29	30.27
Solyc12g019430.1.1	Tomato	cytosol, plastid, vacuole	17.79	30.21
Solyc06g035430.2.1	Tomato	nucleus	30.98	29.19
Solyc08g006950.2.1	Tomato	nucleus	32.52	27.11
Solyc09g008940.2.1	Tomato	nucleus	31.29	24.46
TraesCS5A01G266900.1	Wheat	cytosol	0.31	0.85
TraesCS5B01G266500.1	Wheat	cytosol	0.31	0.85
TraesCS5D01G274800.1	Wheat	cytosol	0.31	0.85
Zm00001d020950_P001	Maize	cytosol	0.31	0.85

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	InterPro:AT_hook_DNA-bd_motif	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:IPR005175	UniProt:K4B5W9	PFAM:PF03479	InterPro:PPC_dom	PFscan:PS51742
PANTHER:PTHR31500	PANTHER:PTHR31500:SF44	SMART:SM00384	SUPFAM:SSF117856	EnsemblPlantsGene:Solyc02g038760.2	EnsemblPlants:Solyc02g038760.2.1
UniParc:UPI0002767914	SEG:seg	:	:	:	:

Description

AT-hook motif nuclear-localized protein 10 [Source:Projected from Arabidopsis thaliana (AT2G33620) UniProtKB/Swiss-Prot;Acc:O22812]

Coordinates

chr2:+:31539297..31544051

Molecular Weight (calculated)

33090.1 Da

IEP (calculated)

7.720

GRAVY (calculated)

-0.154

Length

326 amino acids

Sequence
(BLAST)

001: MSFVDSNGVH SSMQNLVSSD AAPTPYYPIM PSMPSPPPAA EIYQVPTPGF TVPLPDLSGV ALPNSIEPVK RKRGRPRKYA PDGSANSGMV SPPSAAQSAG
101: GFSPTEGGDV PLRKKGRGRP PGSGRKQQLG DLGSASAGTG FKPHIITVQA GEDVWAKLMS FSQSTSQAVC IMSANGSISN VTLQQAALSV GNVAYEGQFE
201: ILSLSGHFLP SESGGERIRT GGLGVLLAGA DGQALGGGVA GVLTAASAVQ VIVGTFGMQG QKQLKLDNSD GFGVPSLVHP PGSTAAKSPS SFGTVSESSG
301: EPVSPHNQLG ETSTISTPVV ANNLPW

Best Arabidopsis Sequence Match ( AT2G33620.1 )
(BLAST)

001: MSGSETGLMA ATRESMQFTM ALHQQQQHSQ AQPQQSQNRP LSFGGDDGTA LYKQPMRSVS PPQQYQPNSA GENSVLNMNL PGGESGGMTG TGSEPVKKRR
101: GRPRKYGPDS GEMSLGLNPG APSFTVSQPS SGGDGGEKKR GRPPGSSSKR LKLQALGSTG IGFTPHVLTV LAGEDVSSKI MALTHNGPRA VCVLSANGAI
201: SNVTLRQSAT SGGTVTYEGR FEILSLSGSF HLLENNGQRS RTGGLSVSLS SPDGNVLGGS VAGLLIAASP VQIVVGSFLP DGEKEPKQHV GQMGLSSPVL
301: PRVAPTQVLM TPSSPQSRGT MSESSCGGGH GSPIHQSTGG PYNNTINMPW K

Arabidopsis Description

AHL10AT-hook motif nuclear-localized protein 10 [Source:UniProtKB/Swiss-Prot;Acc:O22812]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.