Factsheet for Solyc09g008940.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400007056	Potato	nucleus	92.33	94.83
VIT_08s0007g04020.t01	Wine grape	nucleus	51.32	59.28
KRH20019	Soybean	nucleus	44.84	49.34
KRH32644	Soybean	plastid	42.69	44.95
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	34.05	42.26
Solyc08g079630.2.1	Tomato	nucleus	30.22	39.25
GSMUA_Achr2P20250_001	Banana	cytosol, peroxisome, plastid	34.53	39.24
GSMUA_Achr6P13410_001	Banana	cytosol, nucleus, peroxisome	33.81	38.52
Solyc03g007150.2.1	Tomato	nucleus	29.5	37.85
Solyc08g007530.2.1	Tomato	nucleus	29.02	36.89
Os11t0149100-01	Rice	cytosol, nucleus, peroxisome	31.89	36.34
Zm00001d004924_P001	Maize	cytosol	31.18	36.31
Zm00001d052495_P001	Maize	cytosol, nucleus, peroxisome	30.7	36.26
Solyc04g053090.1.1	Tomato	plastid	14.39	35.5
EES15662	Sorghum	cytosol, nucleus, peroxisome	29.98	35.11
Solyc01g091370.2.1	Tomato	nucleus	26.62	34.91
EES07975	Sorghum	cytosol	30.22	34.81
Solyc04g053100.1.1	Tomato	plastid	13.43	33.73
Solyc06g035430.2.1	Tomato	nucleus	27.82	33.53
Solyc08g080960.2.1	Tomato	nucleus	26.62	33.23
Solyc01g094460.2.1	Tomato	nucleus	26.86	33.04
TraesCS5D01G138000.1	Wheat	plastid	28.78	32.7
TraesCS5B01G130400.1	Wheat	plastid	28.78	32.61
Os12t0147000-00	Rice	nucleus	29.5	32.28
TraesCS5A01G130500.1	Wheat	plastid	28.54	32.25
HORVU5Hr1G041290.4	Barley	cytosol, nucleus, peroxisome	28.78	32.17
TraesCS5B01G129200.1	Wheat	plastid	28.3	32.15
Solyc12g094710.1.1	Tomato	nucleus	26.86	31.37
Solyc02g038760.2.1	Tomato	nucleus	24.46	31.29
GSMUA_Achr3P03040_001	Banana	nucleus, peroxisome, plasma membrane	35.25	30.37
Solyc08g008030.2.1	Tomato	nucleus	25.18	30.35
Solyc02g082300.2.1	Tomato	nucleus, plastid	18.7	29.89
Solyc11g006190.1.1	Tomato	nucleus	23.5	29.08
Solyc08g077030.2.1	Tomato	nucleus	27.82	28.36
Solyc08g006950.2.1	Tomato	nucleus	26.38	28.13
Solyc12g019430.1.1	Tomato	cytosol, plastid, vacuole	11.51	25.0

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	InterPro:AT_hook_DNA-bd_motif	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:IPR005175	UniProt:K4CQS5	PFAM:PF03479	InterPro:PPC_dom	PFscan:PS51742
PANTHER:PTHR31500	PANTHER:PTHR31500:SF14	SMART:SM00384	SUPFAM:SSF117856	EnsemblPlantsGene:Solyc09g008940.2	EnsemblPlants:Solyc09g008940.2.1
UniParc:UPI000276C2D0	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr9:+:2333443..2337481

Molecular Weight (calculated)

41508.6 Da

IEP (calculated)

7.025

GRAVY (calculated)

-0.214

Length

417 amino acids

Sequence
(BLAST)

001: MEMEDKESTE SGSLGVNSEY DSPPPEQPLA VVPVVAGGAE AGANGSFSSG VGGVVGTQVM DISLGGTGGG GMVGSGGNGV VVGSGDKKKR GRPRKYDADG
101: NLTPQYIKAA AAAAAKAAAA AAVGSGGGGG VVVGGAVTSP GGGGVTSPPT GFTITSPVLS SGGFSSSKRG RGRPTGAGNL QLIASLGELF AHTAGGDFMP
201: HVVTVHTGED VAGKVYSFVQ KGSRGICVLS ANGAVSNVTI RQPGSSGGLL TYEGRFEILA LTGSYTVSDN GGMKTRSGGL SVSLAGPDGR VIGGGIAGSL
301: TAASPIQMVV GSFMPNAFKT HNKRKHHQIE SRGPPVIHSS PDPVSMIRPV SQAPPSSNIT LTQTSQVPSH NHGEADNSTS NKDMPNSTST DTSDCNGSEP
401: AFEQRSYPDI NVSIPME

Best Arabidopsis Sequence Match ( AT2G45850.1 )
(BLAST)

001: MDRRDAMGLS GSGSYYIHRG LSGSGPPTFH GSPQQQQGLR HLPNQNSPFG SGSTGFGSPS LHGDPSLATA AGGAGALPHH IGVNMIAPPP PPSETPMKRK
101: RGRPRKYGQD GSVSLALSSS SVSTITPNNS NKRGRGRPPG SGKKQRMASV GELMPSSSGM SFTPHVIAVS IGEDIASKVI AFSQQGPRAI CVLSASGAVS
201: TATLIQPSAS PGAIKYEGRF EILALSTSYI VATDGSFRNR TGNLSVSLAS PDGRVIGGAI GGPLIAASPV QVIVGSFIWA APKIKSKKRE EEASEVVQET
301: DDHHVLDNNN NTISPVPQQQ PNQNLIWSTG SRQMDMRHAH ADIDLMRG

Arabidopsis Description

AHL9AT-hook motif nuclear-localized protein 9 [Source:UniProtKB/Swiss-Prot;Acc:O80834]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.