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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus, plastid

Predictor Summary:
  • nucleus 3
  • plastid 3
  • cytosol 1
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus, plastid
Any Predictor:cytosol, nucleus, plasma membrane, plastid
BaCelLo:nucleus
ChloroP:plastid
MultiLoc:cytosol
Plant-mPloc:plasma membrane
PProwler:plastid
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400035486 Potato nucleus, plastid 76.25 76.25
Solyc04g053090.1.1 Tomato plastid 20.31 31.36
Solyc02g038760.2.1 Tomato nucleus 37.16 29.75
Solyc04g053100.1.1 Tomato plastid 18.39 28.92
Solyc12g019430.1.1 Tomato cytosol, plastid, vacuole 20.69 28.12
Zm00001d020951_P002 Maize cytosol, nucleus, peroxisome, plastid 32.95 25.67
Solyc03g007150.2.1 Tomato nucleus 31.42 25.23
Solyc01g094460.2.1 Tomato nucleus 32.18 24.78
Solyc12g094710.1.1 Tomato nucleus 33.72 24.65
TraesCS5D01G274900.1 Wheat plastid 27.59 24.57
Solyc08g079630.2.1 Tomato nucleus 29.5 23.99
Solyc01g091370.2.1 Tomato nucleus 29.12 23.9
Solyc08g007530.2.1 Tomato nucleus 29.5 23.48
Solyc11g006190.1.1 Tomato nucleus 29.89 23.15
Solyc08g008030.2.1 Tomato nucleus 30.27 22.83
Solyc08g077030.2.1 Tomato nucleus 35.25 22.49
Solyc06g035430.2.1 Tomato nucleus 29.12 21.97
Solyc08g080960.2.1 Tomato nucleus 27.97 21.86
TraesCS5B01G266600.1 Wheat endoplasmic reticulum, mitochondrion, nucleus, peroxisome 31.42 20.76
TraesCS5A01G267000.1 Wheat nucleus, peroxisome, vacuole 31.03 20.4
Solyc08g006950.2.1 Tomato nucleus 30.27 20.2
Solyc09g008940.2.1 Tomato nucleus 29.89 18.7
TraesCS5A01G266900.1 Wheat cytosol 0.38 0.85
TraesCS5B01G266500.1 Wheat cytosol 0.38 0.85
TraesCS5D01G274800.1 Wheat cytosol 0.38 0.85
Zm00001d020950_P001 Maize cytosol 0.38 0.85
Protein Annotations
EnsemblPlants:Solyc02g082300.2.1EnsemblPlantsGene:Solyc02g082300.2Gene3D:3.30.1330.80InterPro:IPR005175InterPro:PPC_domPANTHER:PTHR31500
PANTHER:PTHR31500:SF44PFAM:PF03479PFscan:PS51742SUPFAM:SSF117856UniParc:UPI0002767F11UniProt:K4BAA0
MapMan:35.1:::::
Description
No Description!
Coordinates
chr2:+:46010609..46012547
Molecular Weight (calculated)
26957.4 Da
IEP (calculated)
4.677
GRAVY (calculated)
-0.123
Length
261 amino acids
Sequence
(BLAST)
001: MENVGSTSAA DDNTPAQPIS SSTPLVPSFP DPSVSTTESW KRGRPNPGVT TPPPSQVAGG GLSSSAQLQA DETAVSTGNK QQSVDLGSEV AALGFMQSHV
101: INIKTGEDIL VKIMSFCEST SKSVCVLSAN GSTSSVSLRR PYQSVTYKGV YDILSLTGFF FVLESGGRHS REGGLTAILG NEEDGDVWGG NVDGLFTAAT
201: DVQVIVSSFS TGKQVQSDNF GTPAKLSPMS VGSLSGSVSP DSPLIVTSKR SPTGVATRLL F
Best Arabidopsis Sequence Match ( AT4G25320.1 )
(BLAST)
001: MEEREGTNIN NNITSSFGLK QQHEAAASDG GYSMDPPPRP ENPNPFLVPP TTVPAAATVA AAVTENAATP FSLTMPTENT SAEQLKKKRG RPRKYNPDGT
101: LVVTLSPMPI SSSVPLTSEF PPRKRGRGRG KSNRWLKKSQ MFQFDRSPVD TNLAGVGTAD FVGANFTPHV LIVNAGEDVT MKIMTFSQQG SRAICILSAN
201: GPISNVTLRQ SMTSGGTLTY EGRFEILSLT GSFMQNDSGG TRSRAGGMSV CLAGPDGRVF GGGLAGLFLA AGPVQVMVGT FIAGQEQSQL ELAKERRLRF
301: GAQPSSISFN ISAEERKARF ERLNKSVAIP APTTSYTHVN TTNAVHSYYT NSVNHVKDPF SSIPVGGGGG GEVGEEEGEE DDDELEGEDE EFGGDSQSDN
401: EIPS
Arabidopsis Description
AHL3AT-hook motif nuclear-localized protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SB31]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.