Factsheet for Solyc08g007530.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
plastid 3
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, peroxisome, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	peroxisome

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g053090.1.1
Solyc04g053100.1.1
Solyc08g006950.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G12080.1	Solyc04g053090.1.1	AT4G17950.1	21798944
AT4G12080.1	Solyc04g053100.1.1	AT4G17950.1	21798944
AT4G12080.1	Solyc08g006950.2.1	AT4G17950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400032575	Potato	plastid	94.82	95.99
Solyc08g079630.2.1	Tomato	nucleus	74.7	76.32
VIT_02s0025g05130.t01	Wine grape	cytosol, nucleus, peroxisome	67.99	67.58
KRH57315	Soybean	nucleus	67.07	67.28
KRH04046	Soybean	nucleus	66.77	66.16
CDY04392	Canola	nucleus	47.56	58.21
CDX94122	Canola	cytosol, nucleus, plasma membrane	56.71	56.53
Bra019359.1-P	Field mustard	nucleus	56.4	56.23
CDX98767	Canola	nucleus	56.1	55.93
AT4G12080.1	Thale cress	nucleus	60.67	55.9
CDY47428	Canola	nucleus	52.44	55.66
Bra033121.1-P	Field mustard	nucleus	52.13	55.16
AT4G22770.1	Thale cress	nucleus	54.88	53.89
Bra013646.1-P	Field mustard	nucleus	49.39	53.11
CDX82971	Canola	plastid	34.76	53.02
Solyc03g007150.2.1	Tomato	nucleus	52.44	52.92
CDY41291	Canola	nucleus	49.09	52.79
HORVU0Hr1G015180.2	Barley	cytosol, extracellular	35.37	49.15
Solyc01g091370.2.1	Tomato	nucleus	47.56	49.06
Zm00001d015090_P001	Maize	extracellular	37.5	46.42
Solyc06g035430.2.1	Tomato	nucleus	44.51	42.2
KXG29351	Sorghum	plastid	45.43	39.73
TraesCS6B01G114000.1	Wheat	cytosol, nucleus, peroxisome	45.73	38.36
TraesCS6D01G076900.1	Wheat	nucleus	45.73	37.88
TraesCS6A01G083100.1	Wheat	cytosol, nucleus, peroxisome	45.73	37.88
Solyc04g053090.1.1	Tomato	plastid	19.51	37.87
Solyc01g094460.2.1	Tomato	nucleus	39.02	37.76
Solyc04g053100.1.1	Tomato	plastid	18.6	36.75
Os02t0125200-00	Rice	mitochondrion	40.24	35.97
Solyc12g094710.1.1	Tomato	nucleus	38.41	35.29
Solyc08g080960.2.1	Tomato	nucleus	35.67	35.03
Solyc08g008030.2.1	Tomato	nucleus	35.98	34.1
Solyc02g038760.2.1	Tomato	nucleus	32.62	32.82
Solyc11g006190.1.1	Tomato	nucleus	30.79	29.97
Solyc02g082300.2.1	Tomato	nucleus, plastid	23.48	29.5
Solyc09g008940.2.1	Tomato	nucleus	36.89	29.02
Solyc08g077030.2.1	Tomato	nucleus	35.67	28.61
Solyc12g019430.1.1	Tomato	cytosol, plastid, vacuole	15.85	27.08
Solyc08g006950.2.1	Tomato	nucleus	31.4	26.34

Protein Annotations

EnsemblPlants:Solyc08g007530.2.1	EnsemblPlantsGene:Solyc08g007530.2	Gene3D:3.30.1330.80	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:IPR005175	InterPro:PPC_dom	PANTHER:PTHR31500	PANTHER:PTHR31500:SF7	PFAM:PF03479	PFscan:PS51742
SEG:seg	SUPFAM:SSF117856	TMHMM:TMhelix	UniParc:UPI000276C63E	UniProt:K4CIP0	MapMan:35.1

Description

No Description!

Coordinates

chr8:-:2071921..2078161

Molecular Weight (calculated)

33566.1 Da

IEP (calculated)

9.931

GRAVY (calculated)

-0.072

Length

328 amino acids

Sequence
(BLAST)

001: MSMSGVTVVG SDAPSDYHVA PRTTENPSQV SGSAPQITNI TPTPVTGAGA GVGAVAGALA LVKKKRGRPR KYGPDGVAVP SAAALSPKPI SSAAPVSSPV
101: IDFSSEKRGK IRPVGLFSKP HMPKLEVENS GEWVSCSVGA NFTPHIITVN TGEDVTMKII SFSQQGPRAI CILSANGVIS SVTLRQPDSS GGTLTYEGRF
201: EILSLTGSFM PSETGGMRNR SGGMSVSLAS PDGRVVGGGV AGLLVAAGPV QIVVGSFLAG NQHEQKTKKN KLEPITAAVV PITSPNIEEP CNHSSAKPTM
301: PASSINWSSS LATESRSKTA DINVTLPA

Best Arabidopsis Sequence Match ( AT4G12080.1 )
(BLAST)

001: MVLNMESTGE AVRSTTGNDG GITVVRSDAP SDFHVAQRSE SSNQSPTSVT PPPPQPSSHH TAPPPLQIST VTTTTTTAAM EGISGGLMKK KRGRPRKYGP
101: DGTVVALSPK PISSAPAPSH LPPPSSHVID FSASEKRSKV KPTNSFNRTK YHHQVENLGE WAPCSVGGNF TPHIITVNTG EDVTMKIISF SQQGPRSICV
201: LSANGVISSV TLRQPDSSGG TLTYEGRFEI LSLSGSFMPN DSGGTRSRTG GMSVSLASPD GRVVGGGLAG LLVAASPVQV VVGSFLAGTD HQDQKPKKNK
301: HDFMLSSPTA AIPISSAADH RTIHSVSSLP VNNNTWQTSL ASDPRNKHTD INVNVT

Arabidopsis Description

AHL1ATAHL1 [Source:UniProtKB/TrEMBL;Acc:A0A178V7H8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.