Factsheet for Solyc06g035430.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g007150.2.1	nucleus
Solyc06g035430.2.1	nucleus
Solyc08g007530.2.1
Solyc08g079630.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25320.1	Solyc08g007530.2.1	AT4G12080.1	21798944
AT4G25320.1	Solyc08g079630.2.1	AT4G12080.1	21798944
AT4G25320.1	Solyc03g007150.2.1	AT4G25320.1	23335615
AT4G25320.1	Solyc06g035430.2.1	AT4G25320.1	23335615
AT4G25320.1	Solyc03g007150.2.1	AT5G51590.1	23335615
AT4G25320.1	Solyc06g035430.2.1	AT5G51590.1	23335615
AT4G25320.1	Solyc03g007150.2.1	AT5G51590.1	23335615
AT4G25320.1	Solyc06g035430.2.1	AT5G51590.1	23335615
AT5G51590.1	Solyc03g007150.2.1	AT5G51590.1	23335615
AT5G51590.1	Solyc06g035430.2.1	AT5G51590.1	23335615

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400071865	Potato	plastid	85.26	95.78
Solyc03g007150.2.1	Tomato	nucleus	63.58	67.69
VIT_16s0022g01810.t01	Wine grape	cytosol, nucleus, peroxisome	57.23	56.41
KRG92455	Soybean	nucleus	52.02	54.55
KRH34345	Soybean	nucleus	52.02	54.55
KRH09229	Soybean	nucleus	50.58	50.87
KRH38723	Soybean	nucleus	50.0	50.29
Solyc08g079630.2.1	Tomato	nucleus	41.62	44.86
Solyc08g007530.2.1	Tomato	nucleus	42.2	44.51
GSMUA_Achr7P06500_001	Banana	cytosol, plasma membrane, plastid	41.62	42.86
Solyc01g091370.2.1	Tomato	nucleus	38.15	41.51
GSMUA_Achr1P19840_001	Banana	nucleus	45.09	40.94
CDX94457	Canola	nucleus	41.04	37.57
CDX89422	Canola	nucleus	41.62	37.5
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	41.33	37.43
Bra019174.1-P	Field mustard	nucleus	42.49	37.12
Bra013886.1-P	Field mustard	nucleus	40.75	37.01
CDX92693	Canola	nucleus	42.2	36.87
CDY49703	Canola	nucleus	42.49	36.84
Os08t0118000-01	Rice	nucleus	39.6	36.83
Solyc04g053090.1.1	Tomato	plastid	17.92	36.69
GSMUA_Achr2P03170_001	Banana	cytosol, peroxisome, plasma membrane	41.04	36.41
AT4G25320.1	Thale cress	nucleus	42.49	36.39
Solyc04g053100.1.1	Tomato	plastid	17.05	35.54
KXG24283	Sorghum	plastid	37.86	33.33
Zm00001d049661_P001	Maize	cytosol, peroxisome, plasma membrane	37.57	33.25
AT5G51590.1	Thale cress	nucleus	40.17	33.17
CDY38874	Canola	nucleus	40.46	33.1
Bra029164.1-P	Field mustard	nucleus	40.46	33.02
CDX87241	Canola	nucleus	37.28	32.99
TraesCS7B01G215600.1	Wheat	plastid	37.28	32.74
CDY16785	Canola	nucleus	36.99	32.65
Bra035899.1-P	Field mustard	nucleus	36.99	32.65
CDY00488	Canola	nucleus	40.46	32.63
Bra028265.1-P	Field mustard	nucleus	40.46	32.63
CDX86910	Canola	nucleus	37.57	32.58
CDY32624	Canola	nucleus	39.88	32.55
Bra010070.1-P	Field mustard	nucleus	37.86	32.51
CDY00271	Canola	nucleus	37.86	32.51
HORVU7Hr1G075040.1	Barley	plastid	36.71	32.32
TraesCS7D01G312100.1	Wheat	plastid	36.99	32.24
Solyc12g094710.1.1	Tomato	nucleus	33.24	32.21
TraesCS7A01G315100.1	Wheat	plastid	36.99	32.16
CDX99902	Canola	nucleus	40.46	31.89
AT5G62260.3	Thale cress	nucleus	36.71	31.44
CDX91598	Canola	nucleus	37.57	31.03
Solyc02g038760.2.1	Tomato	nucleus	29.19	30.98
Solyc01g094460.2.1	Tomato	nucleus	30.06	30.68
Bra029271.1-P	Field mustard	cytosol, nucleus, peroxisome	35.55	30.67
CDY30710	Canola	nucleus	35.55	30.67
Bra022555.1-P	Field mustard	nucleus	36.71	30.31
CDY65097	Canola	nucleus	36.42	30.07
Solyc08g008030.2.1	Tomato	nucleus	29.48	29.48
Solyc02g082300.2.1	Tomato	nucleus, plastid	21.97	29.12
Solyc08g080960.2.1	Tomato	nucleus	28.03	29.04
Solyc09g008940.2.1	Tomato	nucleus	33.53	27.82
Solyc08g077030.2.1	Tomato	nucleus	31.79	26.89
Solyc11g006190.1.1	Tomato	nucleus	24.86	25.52
Solyc12g019430.1.1	Tomato	cytosol, plastid, vacuole	13.87	25.0
Solyc08g006950.2.1	Tomato	nucleus	27.46	24.3

Protein Annotations

EnsemblPlants:Solyc06g035430.2.1	EnsemblPlantsGene:Solyc06g035430.2	Gene3D:3.30.1330.80	InterPro:IPR005175	InterPro:PPC_dom	PANTHER:PTHR31500
PANTHER:PTHR31500:SF18	PFAM:PF03479	PFscan:PS51742	SEG:seg	SUPFAM:SSF117856	UniParc:UPI0002765B62
UniProt:K4C4R5	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr6:-:24308994..24313705

Molecular Weight (calculated)

36411.8 Da

IEP (calculated)

7.031

GRAVY (calculated)

-0.284

Length

346 amino acids

Sequence
(BLAST)

001: MEDKEGVNSS EVMVKSNEIS ENYRMNPSNE NVNGFNGAMA AVVPANPMSV AAPSTEGNKK RGRPKKYRPD GSLNTALSPM PISVSIPLSG DFSGWKNNGS
101: RPVESFKKKQ QKIELGIPGE RVAYSAGANI SPHVAYSVGG NFTPHVFTVN AGEDVAMKII SFAQQGSRAI CVLTANGVIS NVTLSQLSSS GGTLTYEGCF
201: EILSLIGSYM SSDTGVTKSR SGGMSVCLSG PDGRVFGGGL AGVFMAAGPV QVVVGSFIPC HQQEQNPKKQ RLEHAATFST AIPTTQIYAE RTDGAYTGPS
301: TNFTSPIPFP GVNTVSLNSI HSSRISALEN NISMPEEESN EQSPSS

Best Arabidopsis Sequence Match ( AT4G25320.1 )
(BLAST)

001: MEEREGTNIN NNITSSFGLK QQHEAAASDG GYSMDPPPRP ENPNPFLVPP TTVPAAATVA AAVTENAATP FSLTMPTENT SAEQLKKKRG RPRKYNPDGT
101: LVVTLSPMPI SSSVPLTSEF PPRKRGRGRG KSNRWLKKSQ MFQFDRSPVD TNLAGVGTAD FVGANFTPHV LIVNAGEDVT MKIMTFSQQG SRAICILSAN
201: GPISNVTLRQ SMTSGGTLTY EGRFEILSLT GSFMQNDSGG TRSRAGGMSV CLAGPDGRVF GGGLAGLFLA AGPVQVMVGT FIAGQEQSQL ELAKERRLRF
301: GAQPSSISFN ISAEERKARF ERLNKSVAIP APTTSYTHVN TTNAVHSYYT NSVNHVKDPF SSIPVGGGGG GEVGEEEGEE DDDELEGEDE EFGGDSQSDN
401: EIPS

Arabidopsis Description

AHL3AT-hook motif nuclear-localized protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SB31]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.