Factsheet for GSMUA_Achr2P03170_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P19840_001	nucleus
GSMUA_Achr2P03170_001	nucleus
GSMUA_Achr7P06500_001	nucleus
GSMUA_AchrUn_...	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25320.1	GSMUA_Achr1P19840_001	AT4G25320.1	23335615
AT4G25320.1	GSMUA_Achr2P03170_001	AT4G25320.1	23335615
AT4G25320.1	GSMUA_Achr7P06500_001	AT4G25320.1	23335615
AT4G25320.1	GSMUA_AchrUn_...	AT4G25320.1	23335615
AT4G25320.1	GSMUA_Achr1P19840_001	AT5G51590.1	23335615
AT4G25320.1	GSMUA_Achr2P03170_001	AT5G51590.1	23335615
AT4G25320.1	GSMUA_Achr7P06500_001	AT5G51590.1	23335615
AT4G25320.1	GSMUA_AchrUn_...	AT5G51590.1	23335615
AT4G25320.1	GSMUA_Achr1P19840_001	AT5G51590.1	23335615
AT4G25320.1	GSMUA_Achr2P03170_001	AT5G51590.1	23335615
AT4G25320.1	GSMUA_Achr7P06500_001	AT5G51590.1	23335615
AT4G25320.1	GSMUA_AchrUn_...	AT5G51590.1	23335615
AT5G51590.1	GSMUA_Achr1P19840_001	AT5G51590.1	23335615
AT5G51590.1	GSMUA_Achr2P03170_001	AT5G51590.1	23335615
AT5G51590.1	GSMUA_Achr7P06500_001	AT5G51590.1	23335615
AT5G51590.1	GSMUA_AchrUn_...	AT5G51590.1	23335615

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P06500_001	Banana	cytosol, plasma membrane, plastid	51.28	59.52
GSMUA_Achr1P19840_001	Banana	nucleus	56.67	58.01
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	53.08	54.19
Os08t0118000-01	Rice	nucleus	51.28	53.76
Zm00001d049661_P001	Maize	cytosol, peroxisome, plasma membrane	51.03	50.9
KRG92455	Soybean	nucleus	42.31	50.0
KRH34345	Soybean	nucleus	42.31	50.0
KXG24283	Sorghum	plastid	50.26	49.87
TraesCS7B01G215600.1	Wheat	plastid	50.26	49.75
TraesCS7A01G315100.1	Wheat	plastid	50.51	49.5
HORVU7Hr1G075040.1	Barley	plastid	49.74	49.36
TraesCS7D01G312100.1	Wheat	plastid	50.0	49.12
VIT_16s0022g01810.t01	Wine grape	cytosol, nucleus, peroxisome	44.1	49.0
KRH09229	Soybean	nucleus	42.05	47.67
KRH38723	Soybean	nucleus	41.54	47.09
Solyc03g007150.2.1	Tomato	nucleus	39.23	47.08
PGSC0003DMT400071865	Potato	plastid	35.9	45.45
PGSC0003DMT400079651	Potato	nucleus	38.72	43.64
GSMUA_Achr7P20540_001	Banana	nucleus	32.56	43.34
GSMUA_Achr1P03070_001	Banana	cytosol, extracellular, nucleus	21.28	42.35
GSMUA_Achr5P20630_001	Banana	nucleus, plasma membrane, plastid	35.9	42.04
GSMUA_Achr5P03370_001	Banana	mitochondrion, plastid	20.0	41.05
Solyc06g035430.2.1	Tomato	nucleus	36.41	41.04
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	34.62	40.18
GSMUA_Achr6P03420_001	Banana	nucleus	35.13	38.06
GSMUA_Achr2P20250_001	Banana	cytosol, peroxisome, plastid	35.64	37.87
GSMUA_Achr6P13410_001	Banana	cytosol, nucleus, peroxisome	35.38	37.7
GSMUA_Achr8P11400_001	Banana	nucleus	32.82	36.99
GSMUA_Achr3P03710_001	Banana	nucleus	34.62	36.99
GSMUA_Achr11P...	Banana	nucleus	34.87	36.66
GSMUA_Achr11P...	Banana	nucleus	34.87	36.27
CDX94457	Canola	nucleus	34.87	35.98
CDX92693	Canola	nucleus	36.15	35.61
GSMUA_Achr4P30000_001	Banana	nucleus	29.74	35.58
Bra019174.1-P	Field mustard	nucleus	35.9	35.35
CDX89422	Canola	nucleus	34.62	35.16
CDY49703	Canola	nucleus	35.9	35.09
Bra013886.1-P	Field mustard	nucleus	33.85	34.65
GSMUA_Achr9P12360_001	Banana	extracellular, vacuole	35.9	34.4
GSMUA_Achr4P27240_001	Banana	cytosol, extracellular, nucleus, plastid	31.03	34.38
AT4G25320.1	Thale cress	nucleus	35.38	34.16
CDX87241	Canola	nucleus	34.1	34.02
CDY16785	Canola	nucleus	34.1	33.93
Bra035899.1-P	Field mustard	nucleus	34.1	33.93
AT5G51590.1	Thale cress	nucleus	36.41	33.89
CDX86910	Canola	nucleus	34.36	33.58
CDY38874	Canola	nucleus	36.15	33.33
Bra029164.1-P	Field mustard	nucleus	36.15	33.25
Bra010070.1-P	Field mustard	nucleus	34.36	33.25
CDY00271	Canola	nucleus	34.36	33.25
AT5G62260.3	Thale cress	nucleus	33.85	32.67
CDY32624	Canola	nucleus	35.38	32.55
GSMUA_Achr2P09840_001	Banana	nucleus	29.74	32.49
CDY00488	Canola	nucleus	35.13	31.93
CDY30710	Canola	nucleus	32.82	31.92
Bra029271.1-P	Field mustard	cytosol, nucleus, peroxisome	32.82	31.92
Bra028265.1-P	Field mustard	nucleus	34.87	31.7
GSMUA_Achr5P23820_001	Banana	cytosol, nucleus, plasma membrane	34.1	31.59
CDX99902	Canola	nucleus	34.87	30.98
Bra022555.1-P	Field mustard	nucleus	32.82	30.55
CDX91598	Canola	nucleus	32.56	30.31
CDY65097	Canola	nucleus	32.31	30.07
GSMUA_Achr3P03040_001	Banana	nucleus, peroxisome, plasma membrane	34.87	28.1

Protein Annotations

EnsemblPlants:GSMUA_Achr2P03170_001	EnsemblPlants:GSMUA_Achr2T03170_001	EnsemblPlantsGene:GSMUA_Achr2G03170_001	Gene3D:3.30.1330.80	InterPro:IPR005175	InterPro:PPC_dom
PANTHER:PTHR31500	PANTHER:PTHR31500:SF15	PFAM:PF03479	PFscan:PS51742	SEG:seg	SUPFAM:SSF117856
UniParc:UPI0002954860	UniProt:M0S4Q8	MapMan:35.1	:	:	:

Description

AT hook motif domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr2G03170_001]

Coordinates

chr2:+:8857115..8860664

Molecular Weight (calculated)

39759.2 Da

IEP (calculated)

8.592

GRAVY (calculated)

-0.058

Length

390 amino acids

Sequence
(BLAST)

001: MEEREGATAT TGAAAAVSPT PVENGESHKQ VAGERGEDKP SQGGQVAASA SASALVLSLA SAPAPAAVVV DGPAAAAEGV ALGMKKKRGR PRKYGPDGKL
101: VRPLNPSPIS ASMPLGEYTP ATAVGAVMKR GRGRLMGFGL GKPLQYGFQL ESVGITTDFP FYSLFSASNP LYYAGELIAC SAGANFTPHV LTVAAGEDVT
201: MKIMSFSQMG PRAICILSAN GVISSVTLRQ SDSFGGTLTY EGHFQLLSLS GSFMPTENGG TKSRSGGMSV SLASPDGRVV GGGIAGLLVA ASPVQVVVGS
301: FLPSYHLEQK IKKAKLETSS ISTPTATIPI SSTATEGAHC GRPTHCSSIT PESNLTNATS FKGDNWAAPL QSVPDTRDPT TNVGITSPGN

Best Arabidopsis Sequence Match ( AT4G12080.1 )
(BLAST)

001: MVLNMESTGE AVRSTTGNDG GITVVRSDAP SDFHVAQRSE SSNQSPTSVT PPPPQPSSHH TAPPPLQIST VTTTTTTAAM EGISGGLMKK KRGRPRKYGP
101: DGTVVALSPK PISSAPAPSH LPPPSSHVID FSASEKRSKV KPTNSFNRTK YHHQVENLGE WAPCSVGGNF TPHIITVNTG EDVTMKIISF SQQGPRSICV
201: LSANGVISSV TLRQPDSSGG TLTYEGRFEI LSLSGSFMPN DSGGTRSRTG GMSVSLASPD GRVVGGGLAG LLVAASPVQV VVGSFLAGTD HQDQKPKKNK
301: HDFMLSSPTA AIPISSAADH RTIHSVSSLP VNNNTWQTSL ASDPRNKHTD INVNVT

Arabidopsis Description

AHL1ATAHL1 [Source:UniProtKB/TrEMBL;Acc:A0A178V7H8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.