Factsheet for TraesCS7B01G215600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	peroxisome, plasma membrane, plastid
ChloroP:	plastid
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G083100.1
TraesCS6B01G114000.1
TraesCS6D01G076900.1
TraesCS7A01G315100.1	nucleus
TraesCS7B01G215600.1	nucleus
TraesCS7D01G312100.1	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25320.1	TraesCS6A01G083100.1	AT4G12080.1	21798944
AT4G25320.1	TraesCS6B01G114000.1	AT4G12080.1	21798944
AT4G25320.1	TraesCS6D01G076900.1	AT4G12080.1	21798944
AT4G25320.1	TraesCS7A01G315100.1	AT4G25320.1	23335615
AT4G25320.1	TraesCS7B01G215600.1	AT4G25320.1	23335615
AT4G25320.1	TraesCS7D01G312100.1	AT4G25320.1	23335615
AT4G25320.1	TraesCS7A01G315100.1	AT5G51590.1	23335615
AT4G25320.1	TraesCS7B01G215600.1	AT5G51590.1	23335615
AT4G25320.1	TraesCS7D01G312100.1	AT5G51590.1	23335615
AT4G25320.1	TraesCS7A01G315100.1	AT5G51590.1	23335615
AT4G25320.1	TraesCS7B01G215600.1	AT5G51590.1	23335615
AT4G25320.1	TraesCS7D01G312100.1	AT5G51590.1	23335615
AT5G51590.1	TraesCS7A01G315100.1	AT5G51590.1	23335615
AT5G51590.1	TraesCS7B01G215600.1	AT5G51590.1	23335615
AT5G51590.1	TraesCS7D01G312100.1	AT5G51590.1	23335615

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G312100.1	Wheat	plastid	97.21	96.47
TraesCS7A01G315100.1	Wheat	plastid	96.95	95.98
HORVU7Hr1G075040.1	Barley	plastid	94.67	94.91
Os08t0118000-01	Rice	nucleus	71.57	75.81
KXG24283	Sorghum	plastid	74.37	74.55
Zm00001d049661_P001	Maize	cytosol, peroxisome, plasma membrane	72.33	72.89
GSMUA_Achr7P06500_001	Banana	cytosol, plasma membrane, plastid	51.27	60.12
GSMUA_Achr1P19840_001	Banana	nucleus	54.31	56.17
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	53.3	54.97
GSMUA_Achr2P03170_001	Banana	cytosol, peroxisome, plasma membrane	49.75	50.26
TraesCS6B01G114000.1	Wheat	cytosol, nucleus, peroxisome	47.46	47.83
VIT_16s0022g01810.t01	Wine grape	cytosol, nucleus, peroxisome	40.61	45.58
Solyc03g007150.2.1	Tomato	nucleus	37.56	45.54
KRH34345	Soybean	nucleus	37.56	44.85
KRG92455	Soybean	nucleus	36.55	43.64
PGSC0003DMT400079651	Potato	nucleus	37.31	42.49
KRH09229	Soybean	nucleus	37.06	42.44
KRH38723	Soybean	nucleus	36.55	41.86
PGSC0003DMT400071865	Potato	plastid	31.73	40.58
Solyc06g035430.2.1	Tomato	nucleus	32.74	37.28
CDX94457	Canola	nucleus	33.5	34.92
TraesCS7B01G143000.1	Wheat	nucleus	31.73	34.63
TraesCS7B01G035400.1	Wheat	cytosol	17.51	34.5
CDY16785	Canola	nucleus	34.26	34.44
Bra035899.1-P	Field mustard	nucleus	34.26	34.44
CDX87241	Canola	nucleus	34.01	34.27
CDX89422	Canola	nucleus	32.99	33.85
Bra013886.1-P	Field mustard	nucleus	32.49	33.6
Bra019174.1-P	Field mustard	nucleus	33.5	33.33
CDX86910	Canola	nucleus	33.76	33.33
CDX92693	Canola	nucleus	33.5	33.33
AT5G62260.3	Thale cress	nucleus	34.01	33.17
CDY49703	Canola	nucleus	33.5	33.08
Bra010070.1-P	Field mustard	nucleus	33.76	33.0
CDY00271	Canola	nucleus	33.76	33.0
AT5G51590.1	Thale cress	nucleus	35.03	32.94
AT4G25320.1	Thale cress	nucleus	33.5	32.67
TraesCS5B01G130400.1	Wheat	plastid	29.7	31.79
TraesCS5B01G129200.1	Wheat	plastid	29.44	31.61
CDY30710	Canola	nucleus	31.98	31.42
Bra029164.1-P	Field mustard	nucleus	33.76	31.37
CDY38874	Canola	nucleus	33.5	31.21
Bra029271.1-P	Field mustard	cytosol, nucleus, peroxisome	31.73	31.17
CDY32624	Canola	nucleus	33.25	30.9
CDY00488	Canola	nucleus	33.25	30.54
TraesCS5B01G266600.1	Wheat	endoplasmic reticulum, mitochondrion, nucleus, peroxisome	30.46	30.38
TraesCS2B01G470900.1	Wheat	cytosol, nucleus, peroxisome, plastid	31.73	30.34
Bra028265.1-P	Field mustard	nucleus	32.99	30.3
CDX99902	Canola	nucleus	32.99	29.61
Bra022555.1-P	Field mustard	nucleus	31.47	29.59
CDX91598	Canola	nucleus	31.22	29.36
CDY65097	Canola	nucleus	31.22	29.36
TraesCS1B01G206100.2	Wheat	nucleus	32.23	28.16
TraesCS7B01G035900.1	Wheat	nucleus	25.38	27.55
TraesCS2B01G604700.1	Wheat	nucleus	26.4	25.81
TraesCS6B01G447600.1	Wheat	nucleus	28.68	23.99
TraesCS5B01G266500.1	Wheat	cytosol	0.51	1.71

Protein Annotations

EnsemblPlants:TraesCS7B01G215600.1	EnsemblPlantsGene:TraesCS7B01G215600	Gene3D:3.30.1330.80	InterPro:IPR005175	InterPro:PPC_dom	PANTHER:PTHR31500
PANTHER:PTHR31500:SF15	PFAM:PF03479	PFscan:PS51742	SEG:seg	SUPFAM:SSF117856	TIGR:cd11378
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr7B:+:395243655..395246860

Molecular Weight (calculated)

39574.0 Da

IEP (calculated)

10.125

GRAVY (calculated)

0.012

Length

394 amino acids

Sequence
(BLAST)

001: MEAKPGEASS PTATAAAAAP VAAAAVPEAT VSFQSPASVP PPAASHAPVP SPVEMVSSSG LFVPPGMMTA MVAAAGRGAL SAGPLVKVGK KRGRPRKYGP
101: DGSLIQPLNA TPISASAPMS AAVAAGQYTP AAAVGAAMKR GRGRPLDFAA AAAKPYHHQL QQPAQQQFGF HFSSIGDMVA CSAGGNFTPH IITVAPGEDV
201: TMKVISFSQQ GPRAICILSA NGVISNVTLR QPDSSGGTLT YEGRFELLSL SGSFMPTENS GTRSRSGGMS VSLASPDGRV VGGGVAGLLV AASPVQIVVG
301: SFLPSYPMEP KQKKARVVAA PTLSQAPPAV RLSSADTHSS EQGHHSLAAP RMNVVTSSAY SADQNWASTV VQSAPAEASR SASSGDLNLT ASGS

Best Arabidopsis Sequence Match ( AT4G12080.1 )
(BLAST)

001: MVLNMESTGE AVRSTTGNDG GITVVRSDAP SDFHVAQRSE SSNQSPTSVT PPPPQPSSHH TAPPPLQIST VTTTTTTAAM EGISGGLMKK KRGRPRKYGP
101: DGTVVALSPK PISSAPAPSH LPPPSSHVID FSASEKRSKV KPTNSFNRTK YHHQVENLGE WAPCSVGGNF TPHIITVNTG EDVTMKIISF SQQGPRSICV
201: LSANGVISSV TLRQPDSSGG TLTYEGRFEI LSLSGSFMPN DSGGTRSRTG GMSVSLASPD GRVVGGGLAG LLVAASPVQV VVGSFLAGTD HQDQKPKKNK
301: HDFMLSSPTA AIPISSAADH RTIHSVSSLP VNNNTWQTSL ASDPRNKHTD INVNVT

Arabidopsis Description

AHL1ATAHL1 [Source:UniProtKB/TrEMBL;Acc:A0A178V7H8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.