Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plasma membrane 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr1P19840_001 | nucleus |
| GSMUA_Achr2P03170_001 | nucleus |
| GSMUA_Achr7P06500_001 | nucleus |
| GSMUA_AchrUn_... | nucleus |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P19840_001 | Banana | nucleus | 76.19 | 67.19 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plastid | 69.64 | 61.26 |
| Os08t0118000-01 | Rice | nucleus | 61.31 | 55.38 |
| Zm00001d049661_P001 | Maize | cytosol, peroxisome, plasma membrane | 61.01 | 52.43 |
| KXG24283 | Sorghum | plastid | 61.01 | 52.16 |
| GSMUA_Achr2P03170_001 | Banana | cytosol, peroxisome, plasma membrane | 59.52 | 51.28 |
| TraesCS7B01G215600.1 | Wheat | plastid | 60.12 | 51.27 |
| TraesCS7D01G312100.1 | Wheat | plastid | 60.42 | 51.13 |
| HORVU7Hr1G075040.1 | Barley | plastid | 59.52 | 50.89 |
| TraesCS7A01G315100.1 | Wheat | plastid | 60.12 | 50.75 |
| KRH34345 | Soybean | nucleus | 49.4 | 50.3 |
| KRG92455 | Soybean | nucleus | 49.11 | 50.0 |
| VIT_16s0022g01810.t01 | Wine grape | cytosol, nucleus, peroxisome | 50.6 | 48.43 |
| Solyc03g007150.2.1 | Tomato | nucleus | 45.54 | 47.08 |
| KRH09229 | Soybean | nucleus | 47.32 | 46.22 |
| PGSC0003DMT400071865 | Potato | plastid | 41.67 | 45.45 |
| GSMUA_Achr5P03370_001 | Banana | mitochondrion, plastid | 25.6 | 45.26 |
| KRH38723 | Soybean | nucleus | 46.13 | 45.06 |
| PGSC0003DMT400079651 | Potato | nucleus | 44.94 | 43.64 |
| GSMUA_Achr7P20540_001 | Banana | nucleus | 37.5 | 43.0 |
| GSMUA_Achr1P03070_001 | Banana | cytosol, extracellular, nucleus | 25.0 | 42.86 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome | 42.56 | 42.56 |
| Solyc06g035430.2.1 | Tomato | nucleus | 42.86 | 41.62 |
| GSMUA_Achr5P20630_001 | Banana | nucleus, plasma membrane, plastid | 40.18 | 40.54 |
| GSMUA_Achr6P13410_001 | Banana | cytosol, nucleus, peroxisome | 43.15 | 39.62 |
| GSMUA_Achr2P20250_001 | Banana | cytosol, peroxisome, plastid | 42.56 | 38.96 |
| GSMUA_Achr6P03420_001 | Banana | nucleus | 40.77 | 38.06 |
| GSMUA_Achr8P11400_001 | Banana | nucleus | 38.1 | 36.99 |
| GSMUA_Achr3P03710_001 | Banana | nucleus | 40.18 | 36.99 |
| GSMUA_Achr4P27240_001 | Banana | cytosol, extracellular, nucleus, plastid | 38.69 | 36.93 |
| GSMUA_Achr11P... | Banana | nucleus | 40.18 | 36.0 |
| CDX94457 | Canola | nucleus | 39.88 | 35.45 |
| GSMUA_Achr11P... | Banana | nucleus | 38.99 | 35.31 |
| CDX89422 | Canola | nucleus | 40.18 | 35.16 |
| Bra019174.1-P | Field mustard | nucleus | 41.37 | 35.1 |
| CDX92693 | Canola | nucleus | 41.37 | 35.1 |
| GSMUA_Achr2P09840_001 | Banana | nucleus | 37.2 | 35.01 |
| CDY49703 | Canola | nucleus | 41.37 | 34.84 |
| Bra013886.1-P | Field mustard | nucleus | 39.29 | 34.65 |
| GSMUA_Achr9P12360_001 | Banana | extracellular, vacuole | 41.96 | 34.64 |
| GSMUA_Achr4P30000_001 | Banana | nucleus | 33.04 | 34.05 |
| AT4G25320.1 | Thale cress | nucleus | 40.18 | 33.42 |
| CDX87241 | Canola | nucleus | 38.39 | 32.99 |
| CDY16785 | Canola | nucleus | 38.39 | 32.91 |
| Bra035899.1-P | Field mustard | nucleus | 38.39 | 32.91 |
| AT5G51590.1 | Thale cress | nucleus | 40.77 | 32.7 |
| CDX86910 | Canola | nucleus | 38.69 | 32.58 |
| CDY00271 | Canola | nucleus | 38.39 | 32.01 |
| Bra010070.1-P | Field mustard | nucleus | 38.39 | 32.01 |
| AT5G62260.3 | Thale cress | nucleus | 38.39 | 31.93 |
| Bra029164.1-P | Field mustard | nucleus | 40.18 | 31.84 |
| GSMUA_Achr5P23820_001 | Banana | cytosol, nucleus, plasma membrane | 39.88 | 31.83 |
| CDY38874 | Canola | nucleus | 39.88 | 31.68 |
| CDY00488 | Canola | nucleus | 40.18 | 31.47 |
| Bra028265.1-P | Field mustard | nucleus | 39.88 | 31.24 |
| CDY30710 | Canola | nucleus | 37.2 | 31.17 |
| Bra029271.1-P | Field mustard | cytosol, nucleus, peroxisome | 36.9 | 30.92 |
| CDY32624 | Canola | nucleus | 38.99 | 30.9 |
| CDX99902 | Canola | nucleus | 40.18 | 30.75 |
| Bra022555.1-P | Field mustard | nucleus | 38.1 | 30.55 |
| CDY65097 | Canola | nucleus | 37.8 | 30.31 |
| CDX91598 | Canola | nucleus | 37.8 | 30.31 |
| GSMUA_Achr3P03040_001 | Banana | nucleus, peroxisome, plasma membrane | 41.07 | 28.51 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr7P06500_001 | EnsemblPlants:GSMUA_Achr7T06500_001 | EnsemblPlantsGene:GSMUA_Achr7G06500_001 | Gene3D:3.30.1330.80 | InterPro:IPR005175 | InterPro:PPC_dom |
| PANTHER:PTHR31500 | PANTHER:PTHR31500:SF15 | PFAM:PF03479 | PFscan:PS51742 | SEG:seg | SUPFAM:SSF117856 |
| UniParc:UPI00029556A6 | UniProt:M0TF90 | MapMan:35.1 | : | : | : |
Description
AT hook motif domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr7G06500_001]
Coordinates
chr7:-:4755149..4760077
Molecular Weight (calculated)
34250.0 Da
IEP (calculated)
8.595
GRAVY (calculated)
-0.063
Length
336 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGSEQGGAP SPSVAVAAAV VGEEKPASEI SGMAAEPMKK KTGRPRKYGP DGSLLRPLNP MPISASVPAG VKYTSAAAVG ATLKRGRGRP VGSMAKTPQL
101: GFDLEHLGEM GACSAGANFT PHVITVASGE IPKPLLNIFL IYVCYCLQDV TMKIISFSQQ GPRAICILSA NGIISNVALR QPYSSGGTLT YEGRFELLSL
201: SGSFMPTENG GTRSRSGGLS VSLASPDGRV VGGGVAGLLV AASPVQVVVG SFLPSYQMEQ KIKKPRLEAG SASTPPSAAP SSSADAEEAF GSGQGQQDRA
301: ATGKLDPSTT SPLGEESWAA SLRSVPADIN MSLPGG
101: GFDLEHLGEM GACSAGANFT PHVITVASGE IPKPLLNIFL IYVCYCLQDV TMKIISFSQQ GPRAICILSA NGIISNVALR QPYSSGGTLT YEGRFELLSL
201: SGSFMPTENG GTRSRSGGLS VSLASPDGRV VGGGVAGLLV AASPVQVVVG SFLPSYQMEQ KIKKPRLEAG SASTPPSAAP SSSADAEEAF GSGQGQQDRA
301: ATGKLDPSTT SPLGEESWAA SLRSVPADIN MSLPGG
001: MEEKGEISPS GVVTVKGDEA LVPRTEFQQN PSFLQFVSPT TVVTPLPPPP APSSAPVPTT VTPGSATAST GSDPTKKKRG RPRKYAPDGS LNPRFLRPTL
101: SPTPISSSIP LSGDYQWKRG KAQQQHQPLE FVKKSHKFEY GSPAPTPPLP GLSCYVGANF TTHQFTVNGG EDVTMKVMPY SQQGSRAICI LSATGSISNV
201: TLGQPTNAGG TLTYEGRFEI LSLSGSFMPT ENGGTKGRAG GMSISLAGPN GNIFGGGLAG MLIAAGPVQV VMGSFIVMHQ AEQNQKKKPR VMEAFAPPQP
301: QAPPQLQQQQ PPTFTITTVN STSPSVNTVE EQKPQAYGGG IVRPMAQMPS SFQNDNSTMN NFTPAYHGYG NMNTGTTHKE EHEDEDGGDD DDDSGDTRSQ
401: SHSG
101: SPTPISSSIP LSGDYQWKRG KAQQQHQPLE FVKKSHKFEY GSPAPTPPLP GLSCYVGANF TTHQFTVNGG EDVTMKVMPY SQQGSRAICI LSATGSISNV
201: TLGQPTNAGG TLTYEGRFEI LSLSGSFMPT ENGGTKGRAG GMSISLAGPN GNIFGGGLAG MLIAAGPVQV VMGSFIVMHQ AEQNQKKKPR VMEAFAPPQP
301: QAPPQLQQQQ PPTFTITTVN STSPSVNTVE EQKPQAYGGG IVRPMAQMPS SFQNDNSTMN NFTPAYHGYG NMNTGTTHKE EHEDEDGGDD DDDSGDTRSQ
401: SHSG
Arabidopsis Description
AHL6AT-hook motif nuclear-localized protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVB0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.