Factsheet for GSMUA_Achr5P03370_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

nucleus 3
plastid 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P03070_001
GSMUA_Achr4P16720_001
GSMUA_Achr4P30000_001
GSMUA_Achr5P20630_001
GSMUA_Achr8P11400_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17950.1	GSMUA_Achr11P...	AT1G63470.1	21798944
AT4G17950.1	GSMUA_Achr11P...	AT1G63470.1	21798944
AT4G17950.1	GSMUA_Achr1P03070_001	AT1G63470.1	21798944
AT4G17950.1	GSMUA_Achr4P30000_001	AT1G63470.1	21798944
AT4G17950.1	GSMUA_Achr5P20630_001	AT1G63470.1	21798944
AT4G17950.1	GSMUA_Achr8P11400_001	AT1G63470.1	21798944
AT4G17950.1	GSMUA_Achr4P16720_001	AT3G51780.1	21798944
AT4G17950.1	GSMUA_AchrUn_...	AT3G51780.1	21798944
AT4G17950.1	GSMUA_Achr11P...	AT3G61310.1	21798944
AT4G17950.1	GSMUA_Achr11P...	AT3G61310.1	21798944
AT4G17950.1	GSMUA_Achr1P03070_001	AT3G61310.1	21798944
AT4G17950.1	GSMUA_Achr4P30000_001	AT3G61310.1	21798944
AT4G17950.1	GSMUA_Achr5P20630_001	AT3G61310.1	21798944
AT4G17950.1	GSMUA_Achr8P11400_001	AT3G61310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os10t0572900-02	Rice	nucleus	71.58	54.18
HORVU7Hr1G065300.2	Barley	mitochondrion, plastid	52.63	52.91
GSMUA_Achr4P27240_001	Banana	cytosol, extracellular, nucleus, plastid	90.0	48.58
GSMUA_Achr2P09840_001	Banana	nucleus	81.05	43.14
HORVU2Hr1G105800.13	Barley	cytosol, vacuole	60.53	37.46
Solyc04g053090.1.1	Tomato	plastid	31.58	35.5
OQU82226	Sorghum	plastid	63.68	34.87
GSMUA_Achr1P03070_001	Banana	cytosol, extracellular, nucleus	35.26	34.18
Solyc04g053100.1.1	Tomato	plastid	29.47	33.73
VIT_02s0012g00900.t01	Wine grape	nucleus	61.05	32.86
KXG38867	Sorghum	plastid	71.05	31.91
Zm00001d030053_P003	Maize	plastid	69.47	31.65
Os04t0589900-01	Rice	nucleus	62.63	31.4
Zm00001d047042_P004	Maize	cytosol, nucleus, plasma membrane	70.0	31.0
PGSC0003DMT400045147	Potato	plastid	53.16	30.61
Zm00001d026036_P001	Maize	nucleus	63.16	29.85
GSMUA_Achr7P20540_001	Banana	nucleus	45.79	29.69
TraesCS1B01G206100.2	Wheat	nucleus	70.0	29.49
GSMUA_Achr3P03710_001	Banana	nucleus	56.32	29.32
TraesCS1A01G190900.1	Wheat	nucleus	70.0	29.3
TraesCS1D01G194900.2	Wheat	nucleus	70.0	29.3
GSMUA_Achr6P03420_001	Banana	nucleus	54.74	28.89
HORVU1Hr1G049980.12	Barley	nucleus	70.0	28.66
TraesCS2D01G448900.1	Wheat	cytosol, nucleus, peroxisome, plastid	61.58	28.4
TraesCS2A01G449500.1	Wheat	plastid	61.05	28.29
TraesCS2B01G470900.1	Wheat	cytosol, nucleus, peroxisome, plastid	61.05	28.16
GSMUA_Achr9P12360_001	Banana	extracellular, vacuole	58.42	27.27
KRH58200	Soybean	nucleus	51.58	27.07
CDY01503	Canola	cytosol	36.84	27.03
GSMUA_Achr5P20630_001	Banana	nucleus, plasma membrane, plastid	46.32	26.43
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	45.26	25.6
GSMUA_Achr7P06500_001	Banana	cytosol, plasma membrane, plastid	45.26	25.6
PGSC0003DMT400052826	Potato	nucleus	48.42	25.56
KRH04337	Soybean	nucleus	46.32	24.72
KRH28286	Soybean	plastid	43.68	24.48
GSMUA_Achr5P23820_001	Banana	cytosol, nucleus, plasma membrane	54.21	24.47
Solyc08g077030.2.1	Tomato	nucleus	52.63	24.45
GSMUA_Achr8P11400_001	Banana	nucleus	44.21	24.28
CDY01506	Canola	nucleus	38.42	24.25
GSMUA_Achr2P20250_001	Banana	cytosol, peroxisome, plastid	46.84	24.25
CDY41027	Canola	cytosol	33.68	24.06
GSMUA_Achr1P19840_001	Banana	nucleus	47.37	23.62
GSMUA_Achr11P...	Banana	nucleus	45.79	23.45
GSMUA_Achr6P13410_001	Banana	cytosol, nucleus, peroxisome	44.74	23.22
GSMUA_Achr11P...	Banana	nucleus	45.79	23.2
CDY26694	Canola	cytosol, plastid	31.58	22.9
CDY68252	Canola	nucleus	35.79	22.9
KRH77206	Soybean	nucleus	40.53	22.78
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	45.79	22.77
AT5G46640.1	Thale cress	nucleus	45.79	22.54
Bra025716.1-P	Field mustard	nucleus	31.05	21.93
CDY26693	Canola	plastid	31.05	21.85
GSMUA_Achr4P30000_001	Banana	nucleus	37.37	21.78
Solyc08g006950.2.1	Tomato	nucleus	44.74	21.74
Bra025718.1-P	Field mustard	nucleus, plastid	33.68	21.05
Bra021027.1-P	Field mustard	nucleus	45.26	20.98
CDX78814	Canola	nucleus	44.74	20.88
CDY35172	Canola	nucleus	38.42	20.68
Bra017536.1-P	Field mustard	nucleus	38.42	20.68
CDY03203	Canola	nucleus	38.95	20.67
CDY26691	Canola	cytosol, plastid	33.68	20.58
Bra025717.1-P	Field mustard	nucleus	32.11	20.13
CDY26692	Canola	nucleus	32.11	20.13
GSMUA_Achr2P03170_001	Banana	cytosol, peroxisome, plasma membrane	41.05	20.0
AT4G17950.1	Thale cress	nucleus	45.79	19.82
CDY08882	Canola	nucleus	44.74	19.54
CDY44500	Canola	nucleus	43.16	19.52
CDX76549	Canola	nucleus	44.74	19.32
CDY41028	Canola	nucleus, plastid	24.74	18.95
GSMUA_Achr3P03040_001	Banana	nucleus, peroxisome, plasma membrane	45.79	17.98
Bra013270.1-P	Field mustard	nucleus	37.89	16.9

Protein Annotations

EnsemblPlants:GSMUA_Achr5P03370_001	EnsemblPlants:GSMUA_Achr5T03370_001	EnsemblPlantsGene:GSMUA_Achr5G03370_001	Gene3D:3.30.1330.80	InterPro:IPR005175	InterPro:PPC_dom
PANTHER:PTHR31500	PANTHER:PTHR31500:SF25	PFAM:PF03479	PFscan:PS51742	SEG:seg	SUPFAM:SSF117856
UniParc:UPI000294FDFC	UniProt:M0SVB6	MapMan:35.1	:	:	:

Description

AT hook motif domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G03370_001]

Coordinates

chr5:-:2337316..2339879

Molecular Weight (calculated)

19494.9 Da

IEP (calculated)

5.646

GRAVY (calculated)

-0.225

Length

190 amino acids

Sequence
(BLAST)

001: MAFSQQGPRT VCILSANGAV SDVTLRQPAI SGGTVTYEGR FEIISLSGSF LLTEDGSTRS RSGGLSIALA GSDGRILGGG VAGMLVAATP VQVVVGSFIA
101: EGKKPKPEPL RWEPSSVPPQ MTGFGAAVTA SPPSEGTSSE SCEDPGSPTN QSGGTCNNSS QHVQSAYPPV SWPHPASLNR HEPDMKLMPN

Best Arabidopsis Sequence Match ( AT2G33620.1 )
(BLAST)

001: MSGSETGLMA ATRESMQFTM ALHQQQQHSQ AQPQQSQNRP LSFGGDDGTA LYKQPMRSVS PPQQYQPNSA GENSVLNMNL PGGESGGMTG TGSEPVKKRR
101: GRPRKYGPDS GEMSLGLNPG APSFTVSQPS SGGDGGEKKR GRPPGSSSKR LKLQALGSTG IGFTPHVLTV LAGEDVSSKI MALTHNGPRA VCVLSANGAI
201: SNVTLRQSAT SGGTVTYEGR FEILSLSGSF HLLENNGQRS RTGGLSVSLS SPDGNVLGGS VAGLLIAASP VQIVVGSFLP DGEKEPKQHV GQMGLSSPVL
301: PRVAPTQVLM TPSSPQSRGT MSESSCGGGH GSPIHQSTGG PYNNTINMPW K

Arabidopsis Description

AHL10AT-hook motif nuclear-localized protein 10 [Source:UniProtKB/Swiss-Prot;Acc:O22812]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.