CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71746
CDX73692
CDX78039
CDX89109
CDX90634
CDY25500
CDY29046
CDY34355
CDY42495
CDY45364
CDY48928
CDY51561
CDY58791
CDY64088

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17950.1	CDY25500	AT1G63470.1	21798944
AT4G17950.1	CDY34355	AT1G63470.1	21798944
AT4G17950.1	CDY45364	AT1G63470.1	21798944
AT4G17950.1	CDY64088	AT1G63470.1	21798944
AT4G17950.1	CDX73692	AT3G51780.1	21798944
AT4G17950.1	CDX78039	AT3G51780.1	21798944
AT4G17950.1	CDX90634	AT3G51780.1	21798944
AT4G17950.1	CDY29046	AT3G51780.1	21798944
AT4G17950.1	CDX71746	AT3G61310.1	21798944
AT4G17950.1	CDX89109	AT3G61310.1	21798944
AT4G17950.1	CDY42495	AT3G61310.1	21798944
AT4G17950.1	CDY48928	AT3G61310.1	21798944
AT4G17950.1	CDY51561	AT3G61310.1	21798944
AT4G17950.1	CDY58791	AT3G61310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021027.1-P	Field mustard	nucleus	91.72	97.32
CDX76549	Canola	nucleus	97.7	96.59
CDX78814	Canola	nucleus	80.0	85.5
CDY44500	Canola	nucleus	81.15	84.05
AT4G17950.1	Thale cress	nucleus	78.62	77.9
CDY01503	Canola	cytosol	36.78	61.78
CDY41027	Canola	cytosol	37.7	61.65
CDY26693	Canola	plastid	37.7	60.74
CDY26694	Canola	cytosol, plastid	36.55	60.69
CDY01506	Canola	nucleus	41.61	60.13
CDY03203	Canola	nucleus	49.2	59.78
CDY35172	Canola	nucleus	48.05	59.21
CDY68252	Canola	nucleus	40.23	58.92
CDY26692	Canola	nucleus	39.31	56.44
CDY41028	Canola	nucleus, plastid	31.95	56.05
CDY26691	Canola	cytosol, plastid	39.54	55.31
VIT_02s0012g00900.t01	Wine grape	nucleus	38.39	47.31
CDX84679	Canola	nucleus	28.05	46.56
CDX79537	Canola	mitochondrion, nucleus, plastid	27.82	46.18
Os10t0572900-02	Rice	nucleus	25.98	45.02
GSMUA_Achr5P03370_001	Banana	mitochondrion, plastid	19.54	44.74
KRH58200	Soybean	nucleus	35.4	42.54
KRH28286	Soybean	plastid	32.41	41.59
HORVU2Hr1G105800.13	Barley	cytosol, vacuole	29.2	41.37
GSMUA_Achr4P27240_001	Banana	cytosol, extracellular, nucleus, plastid	33.1	40.91
Solyc04g053090.1.1	Tomato	plastid	15.86	40.83
KRH04337	Soybean	nucleus	33.1	40.45
KRH77206	Soybean	nucleus	30.8	39.65
Os04t0589900-01	Rice	nucleus	34.02	39.05
OQU82226	Sorghum	plastid	31.03	38.9
HORVU7Hr1G065300.2	Barley	mitochondrion, plastid	16.78	38.62
Solyc04g053100.1.1	Tomato	plastid	14.71	38.55
GSMUA_Achr2P09840_001	Banana	nucleus	31.03	37.82
PGSC0003DMT400052826	Potato	nucleus	31.03	37.5
CDY42495	Canola	nucleus	27.36	35.21
CDY07239	Canola	plasma membrane	18.62	35.06
Zm00001d026036_P001	Maize	nucleus	32.18	34.83
CDX89109	Canola	nucleus	26.44	34.33
CDY37070	Canola	nucleus	26.9	34.31
CDY48928	Canola	nucleus	27.13	34.3
TraesCS2B01G470900.1	Wheat	cytosol, nucleus, peroxisome, plastid	32.41	34.22
CDX71746	Canola	nucleus	26.9	34.01
TraesCS2A01G449500.1	Wheat	plastid	31.95	33.9
CDY37704	Canola	nucleus	29.2	33.87
CDY07238	Canola	nucleus	24.6	33.86
TraesCS2D01G448900.1	Wheat	cytosol, nucleus, peroxisome, plastid	31.95	33.74
CDY47428	Canola	nucleus	23.91	33.66
CDY58791	Canola	nucleus	25.29	33.54
CDY51561	Canola	nucleus	26.21	33.53
CDY27354	Canola	nucleus	26.9	33.52
Zm00001d030053_P003	Maize	plastid	31.95	33.33
CDY04392	Canola	nucleus	20.46	33.21
KXG38867	Sorghum	plastid	31.72	32.62
CDY64088	Canola	nucleus, plasma membrane, plastid	27.13	32.6
CDY25500	Canola	nucleus	27.59	32.43
Zm00001d047042_P004	Maize	cytosol, nucleus, plasma membrane	31.72	32.17
CDY45364	Canola	nucleus	27.13	32.15
CDY23720	Canola	extracellular, plasma membrane, vacuole	29.2	31.91
CDX94122	Canola	cytosol, nucleus, plasma membrane	23.68	31.31
Solyc08g006950.2.1	Tomato	nucleus	28.05	31.2
CDY41291	Canola	nucleus	21.84	31.15
CDX98767	Canola	nucleus	23.45	31.0
CDY34355	Canola	nucleus	26.9	30.95
TraesCS1B01G206100.2	Wheat	nucleus	31.49	30.38
TraesCS1D01G194900.2	Wheat	nucleus	31.49	30.18
TraesCS1A01G190900.1	Wheat	nucleus	31.49	30.18
CDX82971	Canola	plastid	14.71	29.77
HORVU1Hr1G049980.12	Barley	nucleus	31.49	29.53
CDY39751	Canola	nucleus	25.75	29.32
CDY46385	Canola	nucleus	25.52	29.06
CDX94457	Canola	nucleus	24.14	27.78
CDY16785	Canola	nucleus	24.14	26.79
CDX87241	Canola	nucleus	23.91	26.6
CDX89422	Canola	nucleus	23.45	26.56
CDX92693	Canola	nucleus	24.14	26.52
CDY49703	Canola	nucleus	24.14	26.32
CDX86910	Canola	nucleus	24.14	26.32
CDY00271	Canola	nucleus	24.37	26.3
CDY38874	Canola	nucleus	25.52	26.24
CDY30005	Canola	nucleus	22.76	25.98
CDY32624	Canola	nucleus	25.29	25.94
CDY21122	Canola	nucleus	22.99	25.91
CDY00488	Canola	nucleus	25.52	25.87
CDY05594	Canola	nucleus	21.15	25.84
CDX91598	Canola	nucleus	24.6	25.54
CDY65097	Canola	nucleus	24.6	25.54
CDY52506	Canola	nucleus	20.46	25.5
CDY52477	Canola	nucleus	21.38	25.27
CDX99902	Canola	nucleus	25.29	25.06
CDY65362	Canola	nucleus	21.38	25.0
CDY30710	Canola	nucleus	22.99	24.94
CDY13231	Canola	nucleus	20.92	22.2

Protein Annotations

EnsemblPlants:CDY08882	EnsemblPlantsGene:GSBRNA2T00000874001	Gene3D:3.30.1330.80	GO:A0A078F720	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:AT_hook_DNA-bd_motif	InterPro:IPR005175	InterPro:PPC_dom	PANTHER:PTHR31500
PANTHER:PTHR31500:SF44	PFAM:PF03479	PFscan:PS51742	ProteinID:CDY08882	ProteinID:CDY08882.1	SEG:seg
SMART:SM00384	SUPFAM:SSF117856	UniParc:UPI0004EEB9EC	UniProt:A0A078F720	MapMan:35.1	:

Description

BnaC08g11120DBnaC08g11120D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F720]

Coordinates

chrLK031990:-:177276..179365

Molecular Weight (calculated)

45748.3 Da

IEP (calculated)

9.971

GRAVY (calculated)

-0.829

Length

435 amino acids

Sequence
(BLAST)

001: MDSRELHQQQ QQQQQHQHPQ QQLQPPPGFL MGSYNRNPNA AAAAALMGPT STSQAIHHRL PFGSLAPHQP QHHQQQQQQQ QLHPHQHHQP QPQHQMDQKT
101: LESLGFEGSP SSVAAQQQQP MRFGIEPQAK KKRGRPRKYA ADGNIGLALA PTSPASNSYG GGAEGGGGGG GDSGGGGNAN SSDPPAKRNR GRPPGSGKKQ
201: LDALGGTGGV GFTPHVIEVK TGEDIAMKVV AFTQQGPRAI CILSATGAVS TVMLRQANNP NGAVKFEGPY EIISMSGSFL NTESNGTVTK TGSLSVSLAR
301: PDGQVVGGCV AGMLVAGSQV QVVVGSFVAD GKKQKQSAGR VQNTPEPASA PANMLTFGGV GGGGGQGSPR SQGQQHSSES SEENESNSPL HRGNNNNNNN
401: HHGLFGNSTP QQLHQMPPMQ QQMYHHHLWP GHNPQ

Best Arabidopsis Sequence Match ( AT4G17950.1 )
(BLAST)

001: MDSREIHHQQ QQQQQQQQQQ QQQQQHLQQQ QQPPPGMLMS HHNSYNRNPN AAAAVLMGHN TSTSQAMHQR LPFGGSMSPH QPQQHQYHHP QPQQQIDQKT
101: LESLGFDGSP SSVAATQQHS MRFGIDHQQV KKKRGRPRKY AADGGGGGGG GSNIALGLAP TSPLPSASNS YGGGNEGGGG GDSAGANANS SDPPAKRNRG
201: RPPGSGKKQL DALGGTGGVG FTPHVIEVKT GEDIATKILA FTNQGPRAIC ILSATGAVTN VMLRQANNSN PTGTVKYEGR FEIISLSGSF LNSESNGTVT
301: KTGNLSVSLA GHEGRIVGGC VDGMLVAGSQ VQVIVGSFVP DGRKQKQSAG RAQNTPEPAS APANMLSFGG VGGPGSPRSQ GQQHSSESSE ENESNSPLHR
401: RSNNNNSNNH GIFGNSTPQP LHQIPMQMYQ NLWPGNSPQ

Arabidopsis Description

AHL13AT-hook motif nuclear-localized protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q940I0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.