CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

plastid 4
mitochondrion 1
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71746
CDX73692
CDX78039
CDX89109
CDX90634
CDY25500
CDY29046
CDY34355
CDY42495
CDY45364
CDY48928
CDY51561
CDY58791
CDY64088

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17950.1	CDY25500	AT1G63470.1	21798944
AT4G17950.1	CDY34355	AT1G63470.1	21798944
AT4G17950.1	CDY45364	AT1G63470.1	21798944
AT4G17950.1	CDY64088	AT1G63470.1	21798944
AT4G17950.1	CDX73692	AT3G51780.1	21798944
AT4G17950.1	CDX78039	AT3G51780.1	21798944
AT4G17950.1	CDX90634	AT3G51780.1	21798944
AT4G17950.1	CDY29046	AT3G51780.1	21798944
AT4G17950.1	CDX71746	AT3G61310.1	21798944
AT4G17950.1	CDX89109	AT3G61310.1	21798944
AT4G17950.1	CDY42495	AT3G61310.1	21798944
AT4G17950.1	CDY48928	AT3G61310.1	21798944
AT4G17950.1	CDY51561	AT3G61310.1	21798944
AT4G17950.1	CDY58791	AT3G61310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26692	Canola	nucleus	83.47	68.32
CDY26693	Canola	plastid	66.94	61.48
CDY26691	Canola	cytosol, plastid	73.79	58.84
CDY26694	Canola	cytosol, plastid	60.48	57.25
CDY68252	Canola	nucleus	68.55	57.24
CDY41027	Canola	cytosol	61.29	57.14
CDY01506	Canola	nucleus	50.4	41.53
CDY01503	Canola	cytosol	41.13	39.38
CDX78814	Canola	nucleus	53.63	32.68
CDY44500	Canola	nucleus	54.84	32.38
CDY08882	Canola	nucleus	56.05	31.95
CDX76549	Canola	nucleus	56.05	31.59
AT4G17950.1	Thale cress	nucleus	53.63	30.3
CDY35172	Canola	nucleus	39.52	27.76
CDY03203	Canola	nucleus	39.92	27.65
VIT_02s0012g00900.t01	Wine grape	nucleus	37.5	26.35
CDX84679	Canola	nucleus	27.82	26.34
CDX79537	Canola	mitochondrion, nucleus, plastid	27.82	26.34
Os10t0572900-02	Rice	nucleus	26.21	25.9
Solyc04g053090.1.1	Tomato	plastid	16.94	24.85
HORVU2Hr1G105800.13	Barley	cytosol, vacuole	30.65	24.76
GSMUA_Achr5P03370_001	Banana	mitochondrion, plastid	18.95	24.74
CDY07239	Canola	plasma membrane	22.58	24.24
Solyc04g053100.1.1	Tomato	plastid	16.13	24.1
CDY58791	Canola	nucleus	31.85	24.09
KRH58200	Soybean	nucleus	35.08	24.03
CDY04392	Canola	nucleus	25.81	23.88
CDY51561	Canola	nucleus	32.66	23.82
CDY47428	Canola	nucleus	29.44	23.62
KRH28286	Soybean	plastid	32.26	23.6
CDY42495	Canola	nucleus	31.45	23.08
PGSC0003DMT400052826	Potato	nucleus	33.47	23.06
GSMUA_Achr4P27240_001	Banana	cytosol, extracellular, nucleus, plastid	32.66	23.01
CDY48928	Canola	nucleus	31.85	22.97
CDX71746	Canola	nucleus	31.85	22.97
Os04t0589900-01	Rice	nucleus	35.08	22.96
OQU82226	Sorghum	plastid	31.85	22.77
CDX89109	Canola	nucleus	30.65	22.69
KRH04337	Soybean	nucleus	32.26	22.47
CDY41291	Canola	nucleus	27.42	22.3
CDY37070	Canola	nucleus	30.65	22.29
KRH77206	Soybean	nucleus	30.24	22.19
CDY07238	Canola	nucleus	28.23	22.15
CDY27354	Canola	nucleus	30.65	21.78
HORVU7Hr1G065300.2	Barley	mitochondrion, plastid	16.53	21.69
GSMUA_Achr2P09840_001	Banana	nucleus	31.05	21.57
CDX82971	Canola	plastid	18.55	21.4
CDX98767	Canola	nucleus	28.23	21.28
CDX94122	Canola	cytosol, nucleus, plasma membrane	28.23	21.28
Zm00001d026036_P001	Maize	nucleus	34.27	21.14
CDY37704	Canola	nucleus	31.85	21.07
TraesCS2D01G448900.1	Wheat	cytosol, nucleus, peroxisome, plastid	34.27	20.63
TraesCS2A01G449500.1	Wheat	plastid	33.87	20.49
CDY64088	Canola	nucleus, plasma membrane, plastid	29.84	20.44
TraesCS2B01G470900.1	Wheat	cytosol, nucleus, peroxisome, plastid	33.87	20.39
CDY25500	Canola	nucleus	29.84	20.0
Solyc08g006950.2.1	Tomato	nucleus	31.45	19.95
CDY34355	Canola	nucleus	29.84	19.58
CDY23720	Canola	extracellular, plasma membrane, vacuole	31.05	19.35
CDY45364	Canola	nucleus	28.63	19.35
Zm00001d030053_P003	Maize	plastid	31.85	18.94
CDY52506	Canola	nucleus	26.61	18.91
Zm00001d047042_P004	Maize	cytosol, nucleus, plasma membrane	32.66	18.88
CDY05594	Canola	nucleus	27.02	18.82
CDX94457	Canola	nucleus	28.63	18.78
CDX89422	Canola	nucleus	29.03	18.75
KXG38867	Sorghum	plastid	31.45	18.44
CDY65362	Canola	nucleus	27.02	18.01
CDY52477	Canola	nucleus	26.61	17.93
CDX92693	Canola	nucleus	28.63	17.93
CDY16785	Canola	nucleus	28.23	17.86
CDY49703	Canola	nucleus	28.63	17.79
CDX87241	Canola	nucleus	27.82	17.65
CDY21122	Canola	nucleus	27.42	17.62
CDY30005	Canola	nucleus	27.02	17.59
CDY39751	Canola	nucleus	27.02	17.54
CDY00271	Canola	nucleus	28.23	17.37
TraesCS1B01G206100.2	Wheat	nucleus	31.45	17.29
CDY46385	Canola	nucleus	26.61	17.28
CDY30710	Canola	nucleus	27.82	17.21
TraesCS1A01G190900.1	Wheat	nucleus	31.45	17.18
TraesCS1D01G194900.2	Wheat	nucleus	31.45	17.18
CDX86910	Canola	nucleus	27.42	17.04
CDX91598	Canola	nucleus	28.63	16.95
CDY65097	Canola	nucleus	28.63	16.95
HORVU1Hr1G049980.12	Barley	nucleus	31.45	16.81
CDY13231	Canola	nucleus	27.42	16.59
CDY00488	Canola	nucleus	28.23	16.32
CDY38874	Canola	nucleus	27.82	16.31
CDX99902	Canola	nucleus	28.23	15.95
CDY32624	Canola	nucleus	27.02	15.8

Protein Annotations

EnsemblPlants:CDY41028	EnsemblPlantsGene:GSBRNA2T00072324001	Gene3D:3.30.1330.80	InterPro:IPR005175	InterPro:PPC_dom	PANTHER:PTHR31500
PANTHER:PTHR31500:SF44	PFAM:PF03479	PFscan:PS51742	ProteinID:CDY41028	ProteinID:CDY41028.1	SEG:seg
SUPFAM:SSF117856	UniParc:UPI0004EECADC	UniProt:A0A078HW97	MapMan:35.1	:	:

Description

BnaC05g14860DBnaC05g14860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HW97]

Coordinates

chrLK032488:-:105192..107695

Molecular Weight (calculated)

25564.5 Da

IEP (calculated)

9.978

GRAVY (calculated)

-0.152

Length

248 amino acids

Sequence
(BLAST)

001: MDSNETHQQQ QNRNAAAALA GPTAPSQAMH NRSSVGALSL LQPQPLQGVM LDGSPYSASV ATQRGRGRPR KYAPPDVNVI DGGGANAGPP AKRKGRPLGS
101: RTKQPRKASG GGGGGGPLTA HVINVNAGED IAMKLVAFVN QEPRDVCILS VAGAVSSAVI QSHNPFGLVK LEGLYVITNM SGTFSNTESN GTVTRTGNLT
201: VSLAGPDFMV VGGFVGGMLV AGSQVQRLSL VTTTTIYIYI SISEEHSC

Best Arabidopsis Sequence Match ( AT4G17950.1 )
(BLAST)

001: MDSREIHHQQ QQQQQQQQQQ QQQQQHLQQQ QQPPPGMLMS HHNSYNRNPN AAAAVLMGHN TSTSQAMHQR LPFGGSMSPH QPQQHQYHHP QPQQQIDQKT
101: LESLGFDGSP SSVAATQQHS MRFGIDHQQV KKKRGRPRKY AADGGGGGGG GSNIALGLAP TSPLPSASNS YGGGNEGGGG GDSAGANANS SDPPAKRNRG
201: RPPGSGKKQL DALGGTGGVG FTPHVIEVKT GEDIATKILA FTNQGPRAIC ILSATGAVTN VMLRQANNSN PTGTVKYEGR FEIISLSGSF LNSESNGTVT
301: KTGNLSVSLA GHEGRIVGGC VDGMLVAGSQ VQVIVGSFVP DGRKQKQSAG RAQNTPEPAS APANMLSFGG VGGPGSPRSQ GQQHSSESSE ENESNSPLHR
401: RSNNNNSNNH GIFGNSTPQP LHQIPMQMYQ NLWPGNSPQ

Arabidopsis Description

AHL13AT-hook motif nuclear-localized protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q940I0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.