Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 1
- plastid 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G190900.1 | Wheat | nucleus | 98.46 | 98.46 |
| TraesCS1B01G206100.2 | Wheat | nucleus | 97.8 | 98.45 |
| HORVU1Hr1G049980.12 | Barley | nucleus | 97.36 | 95.26 |
| Os10t0572900-02 | Rice | nucleus | 51.98 | 94.02 |
| KXG38867 | Sorghum | plastid | 73.13 | 78.49 |
| Zm00001d030053_P003 | Maize | plastid | 70.93 | 77.22 |
| Zm00001d047042_P004 | Maize | cytosol, nucleus, plasma membrane | 72.91 | 77.16 |
| GSMUA_Achr5P03370_001 | Banana | mitochondrion, plastid | 29.3 | 70.0 |
| GSMUA_Achr4P27240_001 | Banana | cytosol, extracellular, nucleus, plastid | 46.26 | 59.66 |
| GSMUA_Achr2P09840_001 | Banana | nucleus | 45.37 | 57.7 |
| VIT_02s0012g00900.t01 | Wine grape | nucleus | 39.65 | 50.99 |
| PGSC0003DMT400045147 | Potato | plastid | 34.14 | 46.97 |
| TraesCS2D01G448900.1 | Wheat | cytosol, nucleus, peroxisome, plastid | 42.51 | 46.84 |
| TraesCS5D01G274900.1 | Wheat | plastid | 30.18 | 46.76 |
| Solyc04g053090.1.1 | Tomato | plastid | 17.18 | 46.15 |
| KRH58200 | Soybean | nucleus | 34.36 | 43.09 |
| Solyc04g053100.1.1 | Tomato | plastid | 15.64 | 42.77 |
| TraesCS7D01G247300.2 | Wheat | mitochondrion, nucleus, peroxisome, plastid | 33.92 | 41.62 |
| KRH04337 | Soybean | nucleus | 31.94 | 40.73 |
| Solyc08g077030.2.1 | Tomato | nucleus | 36.12 | 40.1 |
| CDY01503 | Canola | cytosol | 22.69 | 39.77 |
| KRH28286 | Soybean | plastid | 28.85 | 38.64 |
| KRH77206 | Soybean | nucleus | 28.63 | 38.46 |
| PGSC0003DMT400052826 | Potato | nucleus | 30.4 | 38.33 |
| AT5G46640.1 | Thale cress | nucleus | 30.18 | 35.49 |
| CDY03203 | Canola | nucleus | 27.31 | 34.64 |
| Solyc08g006950.2.1 | Tomato | nucleus | 29.74 | 34.53 |
| Bra017536.1-P | Field mustard | nucleus | 26.21 | 33.71 |
| CDY35172 | Canola | nucleus | 26.21 | 33.71 |
| CDX78814 | Canola | nucleus | 29.96 | 33.42 |
| Bra021027.1-P | Field mustard | nucleus | 29.52 | 32.68 |
| TraesCS5D01G138000.1 | Wheat | plastid | 25.99 | 32.15 |
| CDY44500 | Canola | nucleus | 29.52 | 31.9 |
| TraesCS7D01G312100.1 | Wheat | plastid | 27.75 | 31.74 |
| AT4G17950.1 | Thale cress | nucleus | 30.62 | 31.66 |
| CDY68252 | Canola | nucleus | 20.7 | 31.65 |
| CDY41027 | Canola | cytosol | 18.5 | 31.58 |
| CDY08882 | Canola | nucleus | 30.18 | 31.49 |
| CDY41028 | Canola | nucleus, plastid | 17.18 | 31.45 |
| CDY01506 | Canola | nucleus | 20.7 | 31.23 |
| CDX76549 | Canola | nucleus | 30.18 | 31.14 |
| CDY26693 | Canola | plastid | 18.5 | 31.11 |
| Bra025716.1-P | Field mustard | nucleus | 18.28 | 30.86 |
| Bra025717.1-P | Field mustard | nucleus | 20.48 | 30.69 |
| CDY26692 | Canola | nucleus | 20.48 | 30.69 |
| Bra025718.1-P | Field mustard | nucleus, plastid | 20.26 | 30.26 |
| CDY26694 | Canola | cytosol, plastid | 17.4 | 30.15 |
| CDY26691 | Canola | cytosol, plastid | 20.26 | 29.58 |
| Bra013270.1-P | Field mustard | nucleus | 27.53 | 29.34 |
| TraesCS6D01G076900.1 | Wheat | nucleus | 25.55 | 29.29 |
| TraesCS7D01G133700.1 | Wheat | cytosol | 13.88 | 27.39 |
| TraesCS2D01G597900.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 23.57 | 26.42 |
| TraesCS7D01G134100.1 | Wheat | nucleus | 20.26 | 25.41 |
| TraesCS5D01G274800.1 | Wheat | cytosol | 1.32 | 5.13 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G194900.2 | EnsemblPlantsGene:TraesCS1D01G194900 | Gene3D:3.30.1330.80 | InterPro:IPR005175 | InterPro:PPC_dom | PANTHER:PTHR31500 |
| PANTHER:PTHR31500:SF25 | PFAM:PF03479 | PFscan:PS51742 | SEG:seg | SUPFAM:SSF117856 | TIGR:cd11378 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr1D:-:272754712..272757586
Molecular Weight (calculated)
47160.6 Da
IEP (calculated)
10.121
GRAVY (calculated)
-0.641
Length
454 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAKDVAPLA AATAAAPTAP APAPAAAPAP APVSQAKPQP QPHTQPPPIA SMPPPPHPFA HHQHHQHHQH QQQQQPPAGS ANPAAPMPGG GMRLSFDQMV
101: GKPPGEHHPH QHQHPHQHQH QHQHPHQHHP PGPMLYAAPP PHAVAPPPGS NALGMGDLMR KKRGRPRKYA PDGSMALALA PLSSASGGAA PPPPPGQQHG
201: FSISSPPSDP NAKRRGRPPG SGKKKQFEAL GSWGISFTPH ILSVKAGEDV ASKIMSFSQQ GPRTVCILSA NGAISNVTLR QPATSGGLVT YEGRFEIISL
301: SGSFLLAEDG DTRSRTGGLS VALAGSDGRV LGGCVAGQLT AATPVQVVVA SFIAEGKKSK PAEPRKVEPM SAPPQMATYV PAPVASPPSE GTSSASSDDS
401: GSPINHGGMP YNHSGGQQHQ QQHMPPTYAS GGWSLSAHHQ NNNRHDADMK MMSN
101: GKPPGEHHPH QHQHPHQHQH QHQHPHQHHP PGPMLYAAPP PHAVAPPPGS NALGMGDLMR KKRGRPRKYA PDGSMALALA PLSSASGGAA PPPPPGQQHG
201: FSISSPPSDP NAKRRGRPPG SGKKKQFEAL GSWGISFTPH ILSVKAGEDV ASKIMSFSQQ GPRTVCILSA NGAISNVTLR QPATSGGLVT YEGRFEIISL
301: SGSFLLAEDG DTRSRTGGLS VALAGSDGRV LGGCVAGQLT AATPVQVVVA SFIAEGKKSK PAEPRKVEPM SAPPQMATYV PAPVASPPSE GTSSASSDDS
401: GSPINHGGMP YNHSGGQQHQ QQHMPPTYAS GGWSLSAHHQ NNNRHDADMK MMSN
001: MSGSETGLMA ATRESMQFTM ALHQQQQHSQ AQPQQSQNRP LSFGGDDGTA LYKQPMRSVS PPQQYQPNSA GENSVLNMNL PGGESGGMTG TGSEPVKKRR
101: GRPRKYGPDS GEMSLGLNPG APSFTVSQPS SGGDGGEKKR GRPPGSSSKR LKLQALGSTG IGFTPHVLTV LAGEDVSSKI MALTHNGPRA VCVLSANGAI
201: SNVTLRQSAT SGGTVTYEGR FEILSLSGSF HLLENNGQRS RTGGLSVSLS SPDGNVLGGS VAGLLIAASP VQIVVGSFLP DGEKEPKQHV GQMGLSSPVL
301: PRVAPTQVLM TPSSPQSRGT MSESSCGGGH GSPIHQSTGG PYNNTINMPW K
101: GRPRKYGPDS GEMSLGLNPG APSFTVSQPS SGGDGGEKKR GRPPGSSSKR LKLQALGSTG IGFTPHVLTV LAGEDVSSKI MALTHNGPRA VCVLSANGAI
201: SNVTLRQSAT SGGTVTYEGR FEILSLSGSF HLLENNGQRS RTGGLSVSLS SPDGNVLGGS VAGLLIAASP VQIVVGSFLP DGEKEPKQHV GQMGLSSPVL
301: PRVAPTQVLM TPSSPQSRGT MSESSCGGGH GSPIHQSTGG PYNNTINMPW K
Arabidopsis Description
AHL10AT-hook motif nuclear-localized protein 10 [Source:UniProtKB/Swiss-Prot;Acc:O22812]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.