Factsheet for Bra025716.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003446.1-P
Bra006876.1-P
Bra007595.1-P
Bra012837.1-P
Bra014444.1-P
Bra027642.1-P
Bra027801.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17950.1	Bra027642.1-P	AT1G63470.1	21798944
AT4G17950.1	Bra027801.1-P	AT1G63470.1	21798944
AT4G17950.1	Bra006876.1-P	AT3G51780.1	21798944
AT4G17950.1	Bra012837.1-P	AT3G51780.1	21798944
AT4G17950.1	Bra003446.1-P	AT3G61310.1	21798944
AT4G17950.1	Bra007595.1-P	AT3G61310.1	21798944
AT4G17950.1	Bra014444.1-P	AT3G61310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26693	Canola	plastid	98.14	97.78
Bra025717.1-P	Field mustard	nucleus	71.0	63.04
Bra025718.1-P	Field mustard	nucleus, plastid	65.8	58.22
Bra021027.1-P	Field mustard	nucleus	57.99	38.05
AT4G17950.1	Thale cress	nucleus	60.59	37.13
Bra013270.1-P	Field mustard	nucleus	54.28	34.27
Bra017536.1-P	Field mustard	nucleus	44.24	33.71
Solyc04g053090.1.1	Tomato	plastid	19.7	31.36
GSMUA_Achr5P03370_001	Banana	mitochondrion, plastid	21.93	31.05
Solyc04g053100.1.1	Tomato	plastid	17.84	28.92
VIT_02s0012g00900.t01	Wine grape	nucleus	37.55	28.61
Bra022946.1-P	Field mustard	nucleus	27.51	28.24
Os10t0572900-02	Rice	nucleus	26.02	27.89
KRH58200	Soybean	nucleus	34.94	25.97
HORVU2Hr1G105800.13	Barley	cytosol, vacuole	29.37	25.73
KRH28286	Soybean	plastid	31.97	25.37
KRH04337	Soybean	nucleus	33.46	25.28
PGSC0003DMT400052826	Potato	nucleus	33.83	25.28
HORVU7Hr1G065300.2	Barley	mitochondrion, plastid	17.47	24.87
KRH77206	Soybean	nucleus	31.23	24.85
GSMUA_Achr4P27240_001	Banana	cytosol, extracellular, nucleus, plastid	32.34	24.72
Bra037321.1-P	Field mustard	nucleus	29.0	24.68
Os04t0589900-01	Rice	nucleus	34.57	24.54
OQU82226	Sorghum	plastid	31.6	24.5
Bra007595.1-P	Field mustard	nucleus	29.74	23.46
GSMUA_Achr2P09840_001	Banana	nucleus	30.86	23.25
Bra021865.1-P	Field mustard	nucleus	30.11	23.14
Bra014444.1-P	Field mustard	nucleus	28.62	23.12
Bra019359.1-P	Field mustard	nucleus	27.88	22.8
Zm00001d026036_P001	Maize	nucleus	33.83	22.64
Bra033121.1-P	Field mustard	nucleus	26.02	22.58
Bra039309.1-P	Field mustard	nucleus	28.62	22.58
Bra020612.1-P	Field mustard	nucleus	29.37	22.44
Bra013646.1-P	Field mustard	nucleus	25.28	22.3
Solyc08g006950.2.1	Tomato	nucleus	31.97	21.99
TraesCS2A01G449500.1	Wheat	plastid	33.46	21.95
TraesCS2D01G448900.1	Wheat	cytosol, nucleus, peroxisome, plastid	33.46	21.84
TraesCS2B01G470900.1	Wheat	cytosol, nucleus, peroxisome, plastid	33.46	21.84
Bra009999.1-P	Field mustard	nucleus	29.37	21.24
Bra040133.1-P	Field mustard	nucleus	30.11	21.15
Bra025511.1-P	Field mustard	nucleus	21.19	20.58
Zm00001d030053_P003	Maize	plastid	30.86	19.9
Zm00001d047042_P004	Maize	cytosol, nucleus, plasma membrane	31.6	19.81
Bra003446.1-P	Field mustard	nucleus	24.91	19.76
Bra035899.1-P	Field mustard	nucleus	28.62	19.64
KXG38867	Sorghum	plastid	30.86	19.62
Bra029271.1-P	Field mustard	cytosol, nucleus, peroxisome	28.62	19.2
Bra027642.1-P	Field mustard	nucleus	27.14	19.16
Bra010070.1-P	Field mustard	nucleus	28.25	18.86
TraesCS1B01G206100.2	Wheat	nucleus	30.86	18.4
Bra027801.1-P	Field mustard	nucleus	25.65	18.4
TraesCS1A01G190900.1	Wheat	nucleus	30.86	18.28
TraesCS1D01G194900.2	Wheat	nucleus	30.86	18.28
Bra019174.1-P	Field mustard	nucleus	26.77	18.18
HORVU1Hr1G049980.12	Barley	nucleus	30.86	17.89
Bra013886.1-P	Field mustard	nucleus	25.28	17.85
Bra029164.1-P	Field mustard	nucleus	27.14	17.22
Bra022555.1-P	Field mustard	nucleus	26.39	16.95
Bra028265.1-P	Field mustard	nucleus	26.77	16.78

Protein Annotations

EnsemblPlants:Bra025716.1	EnsemblPlants:Bra025716.1-P	EnsemblPlantsGene:Bra025716	InterPro:IPR005175	InterPro:PPC_dom	PANTHER:PTHR31500
PFAM:PF03479	PFscan:PS51742	SEG:seg	SUPFAM:SSF117856	UniParc:UPI000253F531	UniProt:M4EAA8
MapMan:35.1	:	:	:	:	:

Description

AT4G17950 (E=1e-025) | DNA-binding family protein

Coordinates

chrA06:-:7454227..7455402

Molecular Weight (calculated)

27163.7 Da

IEP (calculated)

9.471

GRAVY (calculated)

-0.366

Length

269 amino acids

Sequence
(BLAST)

001: MDSKETQQQQ NRNAAAALAG PTSTSQAMHN RSSVGALSLR QPQALQGVMP DGSPYSASVA TQQPWRQVKR GRGRPRKYAP PDGGDSGGGA NAGPPARGGE
101: EGSFTAHVIN INAGEDIAAK LLAFVNQKPR HVCVLSALGD VSVAELSNNP LGLGLVKYEG PYVITAMSGV FSSTESNGTV TTTGNLNVSL AGPDFKTVGG
201: RVGGMLVAGS PFQVIVGSFV PEGVKLSAAS GPDNVLNSSG GGGPGLPQSQ GPSKSSEENA SKSPGNNAQ

Best Arabidopsis Sequence Match ( AT4G17950.1 )
(BLAST)

001: MDSREIHHQQ QQQQQQQQQQ QQQQQHLQQQ QQPPPGMLMS HHNSYNRNPN AAAAVLMGHN TSTSQAMHQR LPFGGSMSPH QPQQHQYHHP QPQQQIDQKT
101: LESLGFDGSP SSVAATQQHS MRFGIDHQQV KKKRGRPRKY AADGGGGGGG GSNIALGLAP TSPLPSASNS YGGGNEGGGG GDSAGANANS SDPPAKRNRG
201: RPPGSGKKQL DALGGTGGVG FTPHVIEVKT GEDIATKILA FTNQGPRAIC ILSATGAVTN VMLRQANNSN PTGTVKYEGR FEIISLSGSF LNSESNGTVT
301: KTGNLSVSLA GHEGRIVGGC VDGMLVAGSQ VQVIVGSFVP DGRKQKQSAG RAQNTPEPAS APANMLSFGG VGGPGSPRSQ GQQHSSESSE ENESNSPLHR
401: RSNNNNSNNH GIFGNSTPQP LHQIPMQMYQ NLWPGNSPQ

Arabidopsis Description

AHL13AT-hook motif nuclear-localized protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q940I0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.