Factsheet for Bra003446.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003446.1-P
Bra007595.1-P
Bra014444.1-P
Bra018956.1-P
Bra030396.1-P
Bra033121.1-P
Bra039309.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G61310.1	Bra018956.1-P	AT1G52240.1	21798944
AT3G61310.1	Bra030396.1-P	AT1G52240.1	21798944
AT3G61310.1	Bra039309.1-P	AT2G45850.1	21798944
AT3G61310.1	Bra003446.1-P	AT3G61310.1	21798944
AT3G61310.1	Bra007595.1-P	AT3G61310.1	21798944
AT3G61310.1	Bra014444.1-P	AT3G61310.1	21798944
AT3G61310.1	Bra033121.1-P	AT4G12080.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY58791	Canola	nucleus	92.04	95.12
CDY51561	Canola	nucleus	85.25	85.0
Bra014444.1-P	Field mustard	nucleus	69.91	71.17
Bra007595.1-P	Field mustard	nucleus	70.8	70.38
AT3G61310.1	Thale cress	nucleus, plastid	73.45	70.34
Bra039309.1-P	Field mustard	nucleus	59.88	59.53
VIT_15s0046g02930.t01	Wine grape	nucleus, plastid	49.56	48.7
KRH65066	Soybean	nucleus	48.38	48.24
KRH48165	Soybean	nucleus	48.08	47.94
KRH40471	Soybean	nucleus	47.49	47.21
KRH00715	Soybean	nucleus	46.9	46.49
GSMUA_Achr5P20630_001	Banana	nucleus, plasma membrane, plastid	44.25	45.05
Solyc01g094460.2.1	Tomato	nucleus	42.18	42.18
PGSC0003DMT400000467	Potato	nucleus	41.89	41.89
GSMUA_Achr8P11400_001	Banana	nucleus	41.89	41.04
GSMUA_Achr11P...	Banana	nucleus	43.36	39.2
GSMUA_Achr11P...	Banana	nucleus	42.77	39.08
Bra025511.1-P	Field mustard	nucleus	28.61	35.02
GSMUA_Achr4P30000_001	Banana	nucleus	33.63	34.97
Bra027801.1-P	Field mustard	nucleus	38.64	34.93
Bra027642.1-P	Field mustard	nucleus	38.64	34.38
TraesCS7A01G565900.1	Wheat	nucleus	30.68	33.88
Bra022946.1-P	Field mustard	nucleus	25.37	32.82
Zm00001d018515_P002	Maize	nucleus	37.17	32.47
HORVU2Hr1G123730.3	Barley	plastid	20.06	32.38
OQU85994	Sorghum	nucleus	38.05	32.17
GSMUA_Achr1P03070_001	Banana	cytosol, extracellular, nucleus	18.58	32.14
Os02t0824300-01	Rice	nucleus	36.58	31.47
Zm00001d051861_P001	Maize	endoplasmic reticulum, nucleus, plastid	36.58	31.0
Zm00001d026652_P001	Maize	plastid	31.86	27.2
Bra025717.1-P	Field mustard	nucleus	24.19	27.06
Bra037321.1-P	Field mustard	nucleus	25.07	26.9
Bra019359.1-P	Field mustard	nucleus	25.96	26.75
Bra013646.1-P	Field mustard	nucleus	23.89	26.56
TraesCS2A01G582300.1	Wheat	nucleus	31.56	26.49
TraesCS2B01G604700.1	Wheat	nucleus	31.27	26.3
Bra033121.1-P	Field mustard	nucleus	23.89	26.13
KXG27470	Sorghum	nucleus	32.15	26.08
Os04t0683900-01	Rice	nucleus	31.86	25.78
TraesCS2D01G597900.1	Wheat	cytosol, nucleus, plasma membrane, plastid	30.68	25.68
HORVU7Hr1G122340.3	Barley	nucleus	26.25	25.5
TraesCS6B01G447600.1	Wheat	nucleus	35.1	25.27
Bra021865.1-P	Field mustard	nucleus	25.96	25.14
Bra025716.1-P	Field mustard	nucleus	19.76	24.91
Bra021027.1-P	Field mustard	nucleus	29.5	24.39
Bra013886.1-P	Field mustard	nucleus	27.14	24.15
Zm00001d001784_P002	Maize	nucleus	30.97	24.14
Bra017536.1-P	Field mustard	nucleus	25.07	24.08
Bra025718.1-P	Field mustard	nucleus, plastid	21.53	24.01
Bra019174.1-P	Field mustard	nucleus	28.02	23.99
TraesCS6A01G403700.1	Wheat	nucleus	37.17	23.73
Bra035899.1-P	Field mustard	nucleus	26.84	23.21
Bra040133.1-P	Field mustard	nucleus	25.96	22.98
Bra029164.1-P	Field mustard	nucleus	28.61	22.88
Bra013270.1-P	Field mustard	nucleus	28.61	22.77
Bra020612.1-P	Field mustard	nucleus	23.3	22.44
Bra028265.1-P	Field mustard	nucleus	28.32	22.38
Bra010070.1-P	Field mustard	nucleus	25.66	21.59
Bra022555.1-P	Field mustard	nucleus	26.55	21.48
Bra009999.1-P	Field mustard	nucleus	23.01	20.97
Bra029271.1-P	Field mustard	cytosol, nucleus, peroxisome	24.78	20.95

Protein Annotations

MapMan:35.1	InterPro:AT_hook_DNA-bd_motif	EnsemblPlantsGene:Bra003446	EnsemblPlants:Bra003446.1	EnsemblPlants:Bra003446.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	InterPro:IPR005175	UniProt:M4CGW3	PFAM:PF03479
InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31500	PANTHER:PTHR31500:SF44	SMART:SM00384	SUPFAM:SSF117856
UniParc:UPI0002541806	SEG:seg	:	:	:	:

Description

AT2G45850 (E=2e-077) | DNA-binding family protein

Coordinates

chrA07:-:13228891..13230382

Molecular Weight (calculated)

36314.1 Da

IEP (calculated)

9.649

GRAVY (calculated)

-0.375

Length

339 amino acids

Sequence
(BLAST)

001: MDQREAMALS GSGYYYIQRG MPGSAPPQTQ PSFYGSQGFQ QFSNPSSPFG STGFVYPPLP VETSQVDSLT PVALPPSGET FVKRKRGRPR KYGQDGSVSL
101: ALSPSLSSSM SPNSNKRGRG RPPGSGKKQR LSSTGNKPLF LQLYVKGSVN GGMRLVYNPH SCLVCQDIAS KVMSFSQQSP RAICVLSVTG AVSTATILQR
201: SLSHGAIKYE GRFELLSLST SYPNATDNDY PNSTVNLAVS LACPDYRVIG GGVGGPLIAA SSVQVIIGSY IWAIPKGKIK KRDEDVQETD ALDDNTAATS
301: PDVPQQSHNL VQTPVGMWST GSRSMDMHHA HMDIDLMRG

Best Arabidopsis Sequence Match ( AT3G61310.1 )
(BLAST)

001: MDRRDAMALS GSGSYYIQRG IPGSGPPPPQ TQPTFHGSQG FHHFTNSISP FGSNPNPNPN PGGVSTGFVS PPLPVDSSPA DSSAAAAGAL VAPPSGDTSV
101: KRKRGRPRKY GQDGGSVSLA LSPSISNVSP NSNKRGRGRP PGSGKKQRLS SIGEMMPSST GMSFTPHVIV VSIGEDIASK VISFSHQGPR AICVLSASGA
201: VSTATLLQPA PSHGTIIYEG LFELISLSTS YLNTTDNDYP NRTGSLAVSL ASPDGRVIGG GIGGPLIAAS QVQVIVGSFI WAIPKGKIKK REETSEDVQD
301: TDALENNNDN TAATSPPVPQ QSQNIVQTPV GIWSTGSRSM DMHHPHMDID LMRG

Arabidopsis Description

AHL11AT-hook motif nuclear-localized protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7L5]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.