Factsheet for Bra018956.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002274.1-P
Bra002404.1-P
Bra002709.1-P
Bra004720.1-P
Bra006620.1-P
Bra012351.1-P
Bra020075.1-P
Bra020425.1-P
Bra020748.1-P
Bra024548.1-P
Bra027190.1-P
Bra028057.1-P
Bra028059.1-P
Bra031892.1-P
Bra036754.1-P
Bra037032.1-P
Bra038059.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G52240.1	Bra012351.1-P	AT1G22920.1	21798944
AT1G52240.1	Bra024548.1-P	AT1G22920.1	21798944
AT1G52240.1	Bra028057.1-P	AT1G34430.1	21798944
AT1G52240.1	Bra028059.1-P	AT1G34570.1	21798944
AT1G52240.1	Bra036754.1-P	AT1G34570.1	21798944
AT1G52240.1	Bra004720.1-P	AT2G42790.1	21798944
AT1G52240.1	Bra020748.1-P	AT3G06430.1	21798944
AT1G52240.1	Bra027190.1-P	AT3G16120.1	21798944
AT1G52240.1	Bra038059.1-P	AT4G15930.1	21798944
AT1G52240.1	Bra037032.1-P	AT4G32960.1	21798944
AT1G52240.1	Bra002274.1-P	AT5G19920.1	21798944
AT1G52240.1	Bra020075.1-P	AT5G19920.1	21798944
AT1G52240.1	Bra002404.1-P	AT5G22310.1	21798944
AT1G52240.1	Bra006620.1-P	AT5G22310.1	21798944
AT1G52240.1	Bra002709.1-P	AT5G57660.1	21798944
AT1G52240.1	Bra020425.1-P	AT5G57660.1	21798944
AT1G52240.1	Bra031892.1-P	AT5G64960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030396.1-P	Field mustard	nucleus	89.18	89.01
CDY52982	Canola	nucleus	98.51	87.85
AT1G52240.1	Thale cress	nucleus	88.99	87.85
Bra021162.1-P	Field mustard	nucleus	55.6	68.66
Bra027189.1-P	Field mustard	nucleus	62.87	63.58
Bra003536.1-P	Field mustard	nucleus	57.84	60.43
Zm00001d012691_P001	Maize	cytosol, extracellular, mitochondrion, plastid	29.48	55.05
TraesCS3D01G296400.1	Wheat	cytosol	47.39	54.98
TraesCS3B01G331000.1	Wheat	nucleus	47.57	54.84
HORVU3Hr1G073200.1	Barley	nucleus	48.51	54.62
Bra036671.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	50.93	54.06
Bra013249.1-P	Field mustard	nucleus, plastid	52.05	53.86
Bra015068.1-P	Field mustard	nucleus	52.05	53.55
TraesCS3A01G305500.1	Wheat	cytosol, mitochondrion, nucleus, plastid	46.27	52.77
Os01t0760300-01	Rice	plasma membrane	50.93	52.4
Zm00001d043383_P001	Maize	nucleus	50.93	52.2
OQU87589	Sorghum	nucleus	50.0	51.84
Bra020048.1-P	Field mustard	nucleus	47.01	51.01
TraesCS3D01G270200.1	Wheat	plastid	49.25	50.97
TraesCS3B01G304200.1	Wheat	plastid	48.88	50.78
Zm00001d038989_P002	Maize	nucleus, plastid	47.57	50.0
Bra006510.1-P	Field mustard	cytosol	45.52	50.0
TraesCS1A01G392100.1	Wheat	plastid	51.12	48.84
EES19937	Sorghum	mitochondrion	50.0	48.73
TraesCS1D01G400200.2	Wheat	plastid	51.31	48.67
TraesCS1B01G420200.1	Wheat	nucleus, plastid	51.12	48.5
Os05t0560100-01	Rice	mitochondrion	50.93	47.98
Os01t0675000-01	Rice	mitochondrion	49.44	47.83
KXG33101	Sorghum	mitochondrion	49.63	47.59
Zm00001d009549_P002	Maize	mitochondrion	48.51	47.1
Bra002246.1-P	Field mustard	plastid	45.34	47.0
Zm00001d043889_P001	Maize	mitochondrion	48.69	43.14
HORVU3Hr1G062030.1	Barley	nucleus, plastid	49.07	42.35
TraesCS3A01G270400.1	Wheat	plastid	49.44	42.13
HORVU1Hr1G086590.2	Barley	plastid	49.81	39.61
Bra015010.1-P	Field mustard	cytosol	38.25	37.48
Bra000971.1-P	Field mustard	nucleus	33.21	37.24
Bra004945.1-P	Field mustard	nucleus, plastid	31.9	37.17
Bra037342.1-P	Field mustard	cytosol	33.02	37.11
Bra009621.1-P	Field mustard	nucleus	37.69	36.07
Bra009152.1-P	Field mustard	cytosol, plastid	38.43	34.62
Bra007183.1-P	Field mustard	cytosol, plastid	35.26	33.1
Bra005323.1-P	Field mustard	nucleus	29.1	31.14
Bra005322.1-P	Field mustard	nucleus	20.71	28.32
Bra021161.1-P	Field mustard	nucleus	5.6	22.56

Protein Annotations

EnsemblPlants:Bra018956.1	EnsemblPlants:Bra018956.1-P	EnsemblPlantsGene:Bra018956	Gene3D:1.20.58.1310	Gene3D:1.20.58.2010	GO:GO:0003674
GO:GO:0005085	GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009
InterPro:IPR005512	InterPro:PRONE_dom	InterPro:RopGEF	PANTHER:PTHR33101	PANTHER:PTHR33101:SF10	PFAM:PF03759
PFscan:PS51334	SEG:seg	UniParc:UPI000253E908	UniProt:M4DR13	MapMan:27.4.3.1	:

Description

AT1G52240 (E=2e-248) ATROPGEF11, ROPGEF11 | ROPGEF11 (RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 11); Rho guanyl-nucleotide exchange factor

Coordinates

chrA06:+:1021072..1023077

Molecular Weight (calculated)

60602.1 Da

IEP (calculated)

5.520

GRAVY (calculated)

-0.591

Length

536 amino acids

Sequence
(BLAST)

001: MEQEQESYKS RLFHFKNMSE HSASRRVKSW SSDCVDTDNF DEDDNDMMMF RSQPGKASSV DRPSLPLSGG AMPNRNDKLA APRMVSYESM EALQAAMDQM
101: KEKFSKLLLG EDMSGGGKGV SSALALSNAI TNLAASAFGE QRRLEPMAAD RKARWRREIG WLISVADHIV EFAPTQQTNK DGTSMEVMST RQRTDLLCNI
201: PALKKLDAML LDCLDKFKDQ NEFYYVKKDS PDSGETRNDD KWWLPAVKVP PNGLSEISRR FLQSQKECVN QVLKAAMAIN AQVLSEMEIP ETYLESLPKN
301: GRASLGDVIY KMITVEMFDA DQFLIEMDLS SEHKILDLKN RIEASIVIWK RKMVQKDTKS AWGSTVSTEK REQFEERAET ILLLLKLGFP GISQSTLDIT
401: KIQCNRDVGL AILESYSRVL ESLAHTVMSR IEDVLYADQL TQEPTNASSK NRYTAIETEN PKEERISFSE ERLSGTSLSD VMQWGNKNNE VKKESYYGGD
501: KEKPLLSKVT GIMTTNKKSS YLENLGTMRS PTARYS

Best Arabidopsis Sequence Match ( AT1G52240.1 )
(BLAST)

001: MVKAMEQEQE TYKSRLFHFK NMNENSASRH VKSWSSDCAM RMDGSDNLDD DDNDMMMFRS QPGKCGSVDR PSLPIGGVTP NRNDKLPRVS SSDSMEALII
101: LQAAMEQMKE KFSKLLLGED MSGGGKGVSS ALALSNAITN LAASAFGEQR RLEPMAVDRK TRWRREIGWL ISVADYIVEF APTQQTNKDG TSMEVMSTRQ
201: RTDLLCNIPA LKKLDAMLLD CLDKFKDQDE FYYVKKDSPD SCETRNDEKW WLPAVKVPPN GLSEISRRFL QSQKECVNQV LKAAMAINAQ VLSEMEIPES
301: YLESLPKNGR ASLGDVIYRM ITVEMFDADQ FLIEMDLSSE HKILDLKNRI EASIVIWKRK MVQKDTKSPW GSTVSIEKRE QFEERAETIL LLLKQGFPGI
401: SQSSLDISKI QFNRDVGLAI LESYSRVLES LAHTVMSRIE DVLYADQLTQ EPTNNAPSKN RYSLKENEKL REERLSFTED MASGTLSDVM QWGNKNNEMK
501: KESFFGDREK PLLSKVTGIM TNNKKSSYLD NLGAMRSPTA RYS

Arabidopsis Description

ROPGEF11ROPGEF11 [Source:UniProtKB/TrEMBL;Acc:A0A178W8V0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.