Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G296400.1 | Wheat | cytosol | 96.34 | 96.97 |
| HORVU3Hr1G073200.1 | Barley | nucleus | 90.11 | 88.03 |
| TraesCS3A01G305500.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 88.82 | 87.87 |
| Zm00001d012691_P001 | Maize | cytosol, extracellular, mitochondrion, plastid | 47.53 | 77.0 |
| Os01t0760300-01 | Rice | plasma membrane | 80.86 | 72.17 |
| OQU87589 | Sorghum | nucleus | 80.22 | 72.15 |
| Zm00001d043383_P001 | Maize | nucleus | 79.14 | 70.36 |
| TraesCS3B01G304200.1 | Wheat | plastid | 55.91 | 50.39 |
| Bra021162.1-P | Field mustard | nucleus | 44.52 | 47.7 |
| CDY45633 | Canola | nucleus | 53.55 | 47.61 |
| Bra018956.1-P | Field mustard | nucleus | 54.84 | 47.57 |
| AT1G52240.1 | Thale cress | nucleus | 55.27 | 47.33 |
| Bra030396.1-P | Field mustard | nucleus | 53.55 | 46.37 |
| CDX87879 | Canola | nucleus | 53.55 | 44.7 |
| Bra027189.1-P | Field mustard | nucleus | 50.11 | 43.96 |
| TraesCS1B01G420200.1 | Wheat | nucleus, plastid | 52.9 | 43.54 |
| CDX97723 | Canola | nucleus | 49.68 | 43.42 |
| AT3G16130.1 | Thale cress | nucleus | 49.46 | 42.75 |
| CDY30136 | Canola | nucleus | 50.32 | 42.55 |
| CDY67259 | Canola | nucleus | 54.84 | 42.43 |
| CDY52982 | Canola | nucleus | 54.84 | 42.43 |
| TraesCS5B01G339200.1 | Wheat | cytosol | 42.37 | 40.79 |
| CDY28381 | Canola | nucleus | 48.39 | 37.56 |
| CDY20181 | Canola | nucleus | 48.17 | 36.9 |
| TraesCS2B01G426300.1 | Wheat | cytosol | 36.34 | 36.34 |
| TraesCS1B01G222700.1 | Wheat | plastid | 36.13 | 35.15 |
| TraesCS3B01G396500.1 | Wheat | cytosol | 39.78 | 34.32 |
| TraesCS1B01G289900.1 | Wheat | cytosol | 40.22 | 33.04 |
| TraesCS6B01G449200.1 | Wheat | nucleus | 33.33 | 32.91 |
| TraesCS6B01G298000.1 | Wheat | cytosol | 32.69 | 27.99 |
| Bra021161.1-P | Field mustard | nucleus | 2.15 | 7.52 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G331000.1 | EnsemblPlantsGene:TraesCS3B01G331000 | Gene3D:1.20.58.1310 | Gene3D:1.20.58.2010 | GO:GO:0003674 | GO:GO:0005089 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR005512 | InterPro:PRONE_dom | InterPro:RopGEF | PANTHER:PTHR33101 |
| PANTHER:PTHR33101:SF26 | PFAM:PF03759 | PFscan:PS51334 | MapMan:27.4.3.1 | : | : |
Description
No Description!
Coordinates
chr3B:+:536070212..536072306
Molecular Weight (calculated)
51675.4 Da
IEP (calculated)
4.978
GRAVY (calculated)
-0.481
Length
465 amino acids
Sequence
(BLAST)
(BLAST)
001: MAANGGSLER RGSMRRSGSK AKEEPAADHR AEDHGTGPSD IEVIKEKFGK LLLGEDMSGS GKGVPSALAL SNAITNLAAA VFGEQRKLEP MAPDRKARWK
101: KEVGWLLSVA DQIVEFVAKK QVLDNGVEME VMGTQQRRDL QSNIPALRKI DAMLLDYLDA FKDRTDFWYV KRDSCSDAEK EESNTSEEKW WIPIVKVPPN
201: GLPPASRAWI QHQKELVNQV LKAAMAINAN CLMEMAIPES YLESLPKNGR ASLGDALYRI ITDVEFDPDD FLSTVDLTSE HKILDLKDRI EASVIIWNRK
301: VHNKDGKSAW GSAVSQEKRE QFEERAQTLL LIIKHRFPGI PQSTLDIAKI QENRDVGFAL LESYSRILES LAFNVMSRIE DVIVADNVAR EKAKKDAPPG
401: SISEAPPQVP DGADSMTLLD FMGWNGDSEG RSDDQSPSAV DPAQDDGRLM KLPNIMTNLF MKTSQ
101: KEVGWLLSVA DQIVEFVAKK QVLDNGVEME VMGTQQRRDL QSNIPALRKI DAMLLDYLDA FKDRTDFWYV KRDSCSDAEK EESNTSEEKW WIPIVKVPPN
201: GLPPASRAWI QHQKELVNQV LKAAMAINAN CLMEMAIPES YLESLPKNGR ASLGDALYRI ITDVEFDPDD FLSTVDLTSE HKILDLKDRI EASVIIWNRK
301: VHNKDGKSAW GSAVSQEKRE QFEERAQTLL LIIKHRFPGI PQSTLDIAKI QENRDVGFAL LESYSRILES LAFNVMSRIE DVIVADNVAR EKAKKDAPPG
401: SISEAPPQVP DGADSMTLLD FMGWNGDSEG RSDDQSPSAV DPAQDDGRLM KLPNIMTNLF MKTSQ
001: MVKAMEQEQE TYKSRLFHFK NMNENSASRH VKSWSSDCAM RMDGSDNLDD DDNDMMMFRS QPGKCGSVDR PSLPIGGVTP NRNDKLPRVS SSDSMEALII
101: LQAAMEQMKE KFSKLLLGED MSGGGKGVSS ALALSNAITN LAASAFGEQR RLEPMAVDRK TRWRREIGWL ISVADYIVEF APTQQTNKDG TSMEVMSTRQ
201: RTDLLCNIPA LKKLDAMLLD CLDKFKDQDE FYYVKKDSPD SCETRNDEKW WLPAVKVPPN GLSEISRRFL QSQKECVNQV LKAAMAINAQ VLSEMEIPES
301: YLESLPKNGR ASLGDVIYRM ITVEMFDADQ FLIEMDLSSE HKILDLKNRI EASIVIWKRK MVQKDTKSPW GSTVSIEKRE QFEERAETIL LLLKQGFPGI
401: SQSSLDISKI QFNRDVGLAI LESYSRVLES LAHTVMSRIE DVLYADQLTQ EPTNNAPSKN RYSLKENEKL REERLSFTED MASGTLSDVM QWGNKNNEMK
501: KESFFGDREK PLLSKVTGIM TNNKKSSYLD NLGAMRSPTA RYS
101: LQAAMEQMKE KFSKLLLGED MSGGGKGVSS ALALSNAITN LAASAFGEQR RLEPMAVDRK TRWRREIGWL ISVADYIVEF APTQQTNKDG TSMEVMSTRQ
201: RTDLLCNIPA LKKLDAMLLD CLDKFKDQDE FYYVKKDSPD SCETRNDEKW WLPAVKVPPN GLSEISRRFL QSQKECVNQV LKAAMAINAQ VLSEMEIPES
301: YLESLPKNGR ASLGDVIYRM ITVEMFDADQ FLIEMDLSSE HKILDLKNRI EASIVIWKRK MVQKDTKSPW GSTVSIEKRE QFEERAETIL LLLKQGFPGI
401: SQSSLDISKI QFNRDVGLAI LESYSRVLES LAHTVMSRIE DVLYADQLTQ EPTNNAPSKN RYSLKENEKL REERLSFTED MASGTLSDVM QWGNKNNEMK
501: KESFFGDREK PLLSKVTGIM TNNKKSSYLD NLGAMRSPTA RYS
Arabidopsis Description
ROPGEF11ROPGEF11 [Source:UniProtKB/TrEMBL;Acc:A0A178W8V0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.