Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G405000.1 | Wheat | nucleus | 94.69 | 97.59 |
| TraesCS6D01G388300.1 | Wheat | nucleus | 95.97 | 96.79 |
| HORVU6Hr1G092860.2 | Barley | nucleus | 92.78 | 95.62 |
| Os07t0481100-01 | Rice | cytosol | 80.68 | 82.61 |
| EER99384 | Sorghum | nucleus, plastid | 80.68 | 82.07 |
| Zm00001d021489_P001 | Maize | nucleus, plastid | 79.19 | 80.39 |
| TraesCS2B01G426300.1 | Wheat | cytosol | 52.23 | 52.9 |
| GSMUA_Achr5P20570_001 | Banana | nucleus | 53.72 | 52.49 |
| TraesCS1B01G222700.1 | Wheat | plastid | 52.87 | 52.09 |
| KRH65102 | Soybean | nucleus | 50.32 | 49.27 |
| Solyc01g094610.2.1 | Tomato | nucleus | 49.89 | 49.27 |
| PGSC0003DMT400000136 | Potato | nucleus | 49.89 | 49.27 |
| KRH15734 | Soybean | cytosol | 27.18 | 49.23 |
| VIT_15s0046g02530.t01 | Wine grape | plastid | 51.59 | 48.21 |
| AT4G00460.2 | Thale cress | nucleus | 47.77 | 47.57 |
| CDY70620 | Canola | nucleus | 47.35 | 47.55 |
| Bra000971.1-P | Field mustard | nucleus | 47.77 | 47.07 |
| CDY51157 | Canola | nucleus | 45.44 | 47.03 |
| CDY07216 | Canola | cytosol | 47.35 | 46.95 |
| KRH48179 | Soybean | nucleus | 37.37 | 46.93 |
| Bra037342.1-P | Field mustard | cytosol | 47.35 | 46.75 |
| CDY57376 | Canola | cytosol, extracellular, nucleus | 7.43 | 46.67 |
| CDX74772 | Canola | nucleus, plastid | 44.16 | 46.22 |
| KRG94270 | Soybean | mitochondrion | 10.83 | 45.95 |
| CDY18892 | Canola | nucleus | 43.74 | 45.58 |
| KRH00737 | Soybean | nucleus, plastid | 49.47 | 45.51 |
| Bra004945.1-P | Field mustard | nucleus, plastid | 44.37 | 45.43 |
| AT2G45890.1 | Thale cress | nucleus, plastid | 44.59 | 45.36 |
| KRH40457 | Soybean | cytosol | 49.26 | 45.31 |
| AT1G01700.4 | Thale cress | nucleus | 47.98 | 43.88 |
| TraesCS5B01G339200.1 | Wheat | cytosol | 41.61 | 40.58 |
| TraesCS3B01G396500.1 | Wheat | cytosol | 45.01 | 39.33 |
| TraesCS1B01G289900.1 | Wheat | cytosol | 45.44 | 37.81 |
| CDX91908 | Canola | cytosol | 47.77 | 34.35 |
| TraesCS3B01G331000.1 | Wheat | nucleus | 32.91 | 33.33 |
| TraesCS3B01G304200.1 | Wheat | plastid | 36.31 | 33.14 |
| TraesCS1B01G420200.1 | Wheat | nucleus, plastid | 38.22 | 31.86 |
| TraesCS6B01G298000.1 | Wheat | cytosol | 31.63 | 27.44 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G449200.1 | EnsemblPlantsGene:TraesCS6B01G449200 | Gene3D:1.20.58.1310 | Gene3D:1.20.58.2010 | GO:GO:0003674 | GO:GO:0005089 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR005512 | InterPro:PRONE_dom | InterPro:RopGEF | ncoils:Coil |
| PANTHER:PTHR33101 | PANTHER:PTHR33101:SF5 | PFAM:PF03759 | PFscan:PS51334 | SEG:seg | MapMan:27.4.3.1 |
Description
No Description!
Coordinates
chr6B:-:708666162..708668391
Molecular Weight (calculated)
53093.9 Da
IEP (calculated)
6.456
GRAVY (calculated)
-0.511
Length
471 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDSSAFPGF HSQYSYDRDY ARPLFRVASF SPERGAGEHE HEQEHSSPRR RGGSMSRTAS FKVTAAPSRL SQAMSKLSMK KLQQAVDERS VEDEEMELMK
101: EKYTKLLLGE DMSGGGKGVC TAVAISNAIT NLYATVFGTC HRLQSLPPEK RSMWNREMDC LLSICEYIVE FAPTVQARPD GSTHDVMATS PRSDILMNLP
201: ALEKLETMLL GILDSFDKAE FWYADQRKQS LSETKKPSSF KRNEDKWWLP EPCVPESGLS DSLHRELQHK RDQASQIHKM AMEINNAILS EMQIPSSFID
301: TLPKTGKVGT GDAIYRYMSS GDQFSPDHLL DFLNLSSEHE ALEVADRVEA AMYVWRRKAS ITHVVTKWEN VTELNADGDK NLILASRARS LLLCLKQRFP
401: GLSQTTLDTS KIHYNKDIGQ AILESYSRVL ESLAYSIVSW IDDVLLADEN AKQGNSTRIQ KQVFSQVSPQ R
101: EKYTKLLLGE DMSGGGKGVC TAVAISNAIT NLYATVFGTC HRLQSLPPEK RSMWNREMDC LLSICEYIVE FAPTVQARPD GSTHDVMATS PRSDILMNLP
201: ALEKLETMLL GILDSFDKAE FWYADQRKQS LSETKKPSSF KRNEDKWWLP EPCVPESGLS DSLHRELQHK RDQASQIHKM AMEINNAILS EMQIPSSFID
301: TLPKTGKVGT GDAIYRYMSS GDQFSPDHLL DFLNLSSEHE ALEVADRVEA AMYVWRRKAS ITHVVTKWEN VTELNADGDK NLILASRARS LLLCLKQRFP
401: GLSQTTLDTS KIHYNKDIGQ AILESYSRVL ESLAYSIVSW IDDVLLADEN AKQGNSTRIQ KQVFSQVSPQ R
001: MENLPNHEEN DDVGYHQSPG PIDPNDHSAS ETPVYSTMST DSFAYHRTCS ETSGGGFSDQ IDETSSFCTE ASPSDWPVLT ESNNSASSNF PTVFDLKHNQ
101: IETDEHLAVQ EISEPELETM KERFSKLLLG EDMSGSGKGV CTAVTISNAI TNLYATVFGQ NLRLEPLEIE QKTTWKREMN CLLSVCDYIF EFIPKSQNLS
201: NGATVEVMES RPRADIYINL PALRKLDSML MEALDSFQKT EFWYAEEGSL SMKSTRSATG SFRKVIVQRK EEKWWLPIPL VPLQGLSEKA RKQLKSKRES
301: TNQIHKAAMA INSSILGEMD IPDSYMATLP KSGKASTGDA IYRHMTSSGR FSPEKLLDRL KIVSEHEALQ LADRVEASMY TWRRKACLNN SKSSWNMVKD
401: LMSITERSDK NYVLAERAES LLFCLKQRYP ELSQTSLDIC KIHCNKDVGK AVLESYSRVL EGLAFNIVAW IDDVLYVDKT MRGEE
101: IETDEHLAVQ EISEPELETM KERFSKLLLG EDMSGSGKGV CTAVTISNAI TNLYATVFGQ NLRLEPLEIE QKTTWKREMN CLLSVCDYIF EFIPKSQNLS
201: NGATVEVMES RPRADIYINL PALRKLDSML MEALDSFQKT EFWYAEEGSL SMKSTRSATG SFRKVIVQRK EEKWWLPIPL VPLQGLSEKA RKQLKSKRES
301: TNQIHKAAMA INSSILGEMD IPDSYMATLP KSGKASTGDA IYRHMTSSGR FSPEKLLDRL KIVSEHEALQ LADRVEASMY TWRRKACLNN SKSSWNMVKD
401: LMSITERSDK NYVLAERAES LLFCLKQRYP ELSQTSLDIC KIHCNKDVGK AVLESYSRVL EGLAFNIVAW IDDVLYVDKT MRGEE
Arabidopsis Description
ATROPGEF2RHO guanyl-nucleotide exchange factor 2 [Source:TAIR;Acc:AT1G01700]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.