Factsheet for TraesCS3B01G396500.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G364400.1	Wheat	nucleus	97.22	96.86
TraesCS3D01G357800.1	Wheat	cytosol	96.66	96.84
Os01t0849100-01	Rice	cytosol	82.37	81.32
EES03886	Sorghum	cytosol	81.63	80.73
HORVU3Hr1G085680.2	Barley	plastid	93.51	77.18
Zm00001d042861_P001	Maize	cytosol	79.78	75.04
TraesCS1B01G289900.1	Wheat	cytosol	69.94	66.61
GSMUA_Achr9P03750_001	Banana	cytosol	56.96	65.88
PGSC0003DMT400067654	Potato	nucleus	58.26	59.02
Solyc08g006550.2.1	Tomato	nucleus	57.7	58.68
AT5G02010.1	Thale cress	nucleus	54.92	54.21
VIT_13s0019g02710.t01	Wine grape	nucleus	59.37	53.69
CDY40325	Canola	nucleus	55.29	53.21
Bra009621.1-P	Field mustard	nucleus	55.29	53.21
CDY10476	Canola	nucleus	55.29	53.21
VIT_08s0007g01380.t01	Wine grape	nucleus	59.93	53.04
KRH73109	Soybean	nucleus	54.55	52.78
TraesCS5B01G339200.1	Wheat	cytosol	45.64	50.93
KRH00070	Soybean	nucleus	57.7	50.73
Solyc09g011480.2.1	Tomato	nucleus	55.29	50.68
KRG97804	Soybean	nucleus	55.1	50.08
KRH31060	Soybean	nucleus	55.29	49.83
Bra009152.1-P	Field mustard	cytosol, plastid	54.36	49.24
KRH15022	Soybean	nucleus	51.21	49.2
KRH75747	Soybean	nucleus	52.69	48.55
KRH65969	Soybean	nucleus	53.99	48.18
AT5G05940.1	Thale cress	cytosol	54.55	48.12
CDY41197	Canola	cytosol, plastid	48.98	47.65
TraesCS2B01G426300.1	Wheat	cytosol	41.0	47.53
CDY40246	Canola	cytosol, plastid	48.98	47.4
AT3G55660.1	Thale cress	cytosol, plastid	50.09	46.63
Solyc10g086660.1.1	Tomato	nucleus	58.63	46.54
CDX70109	Canola	cytosol	54.36	46.29
Bra007183.1-P	Field mustard	cytosol, plastid	48.98	46.23
PGSC0003DMT400049230	Potato	nucleus	59.18	46.1
CDX98888	Canola	cytosol	54.55	46.08
TraesCS1B01G222700.1	Wheat	plastid	40.45	45.61
PGSC0003DMT400005554	Potato	cytosol, plastid	55.47	45.37
TraesCS6B01G449200.1	Wheat	nucleus	39.33	45.01
Zm00001d047899_P001	Maize	cytosol	22.63	43.88
KRH49210	Soybean	nucleus, plastid	57.88	43.64
VIT_08s0007g01390.t01	Wine grape	nucleus	47.87	43.36
TraesCS3B01G331000.1	Wheat	nucleus	34.32	39.78
Zm00001d023356_P001	Maize	cytosol	25.6	38.87
TraesCS3B01G304200.1	Wheat	plastid	36.92	38.57
Zm00001d037119_P001	Maize	plastid	29.68	37.12
Zm00001d049679_P001	Maize	plastid	29.13	35.52
TraesCS1B01G420200.1	Wheat	nucleus, plastid	36.55	34.87
TraesCS6B01G298000.1	Wheat	cytosol	33.77	33.52
GSMUA_Achr6P14950_001	Banana	mitochondrion	53.43	21.69

Protein Annotations

EnsemblPlants:TraesCS3B01G396500.1	EnsemblPlantsGene:TraesCS3B01G396500	Gene3D:1.20.58.2010	GO:GO:0003674	GO:GO:0005089	GO:GO:0005488
GO:GO:0005515	InterPro:IPR005512	InterPro:PRONE_dom	InterPro:RopGEF	PANTHER:PTHR33101	PANTHER:PTHR33101:SF1
PFAM:PF03759	PFscan:PS51334	SEG:seg	MapMan:27.4.3.1	:	:

Description

No Description!

Coordinates

chr3B:-:625334286..625337246

Molecular Weight (calculated)

59313.8 Da

IEP (calculated)

6.781

GRAVY (calculated)

-0.319

Length

539 amino acids

Sequence
(BLAST)

001: MGSGEEERGG VSEAAFTDSA DGSSSSSDAA STDDWPALAL APKKTPPCSG VPDAELNGKQ KRRAGPEMEM MKERFAKLLL GEDMSGSGKG VCTALAIANA
101: ITNLCATIFG QLWRLEPLPP EKKAMWRREM DWLLCISDHI VELVPTWQSF PDGTRLEIMT SRPRSDLYIN LPALRKLDHM LLEILDSFRD TEFWYVDQGI
201: CAADCDGSAS FRAAFHHRDD KWWLPVPRVP PGGLRDKTRK QLQHKRDCAN QILKAAMAIN SNALAEMDVP VSYLDSLPKN GRATLGDVIY RYITSDHFSP
301: ECLLDSLDLS TEYQALEIAS RVEASVHVWR RRVPAKPVNG LGRTASASAR SWSMVRDMLM DSEKRELLAE RAEGLLICLK QRFPALTQTS LDMSKIQYNK
401: DVGKSILESY SRVLESLASN IVARIDDLLN IDELNRHVEQ LSTGEADLKM ACGRAVVPPY QQVPASGTPF VTAYATPSFS PGRLSSPRTS VGAGRRSQGN
501: RAAAAAKKAL TDHLGPSEVR GMIIVNRSTM IDVSTTTDL

Best Arabidopsis Sequence Match ( AT3G55660.1 )
(BLAST)

001: MEDNSCIGFE GSKRFGETSK RIIGLIDSVT ESTTDSSLSS SSSGVGSSSG RSSVAERSVS SPPTKSQILG WPLGQGSWRK SSGKMKKKTP TKIDDFGFKR
101: VGTETSEIEL LKERMAKLLL GEDMSGSGEG VCPALAISNA ITNLYAAILG QQWRLEPIPS EKKLMWRREI EVLLSVSDHI VELVPSFQNF PNGNKIEVMN
201: CRPRSDLFTC LPALRKLDNM LIEILDSFGE TEFWYVDQGI VAAESARSNS FREDGDKWWL PLPRVPSDGL TEQTRKKLDH TREFTNQILK ACMSINSIAL
301: AEMEVPQSYL EALPKNGRSC LGDFLYRNIT SDNFSADHLL ESIDLSSELA VVEMANRVEA SMYVWRRRAH SRHLISLYRS TSTRWGMIVK EMMMHQTDGD
401: KREIFAERAE SLLIRLKQRF PGLRQTALDT SKIQYNKDVG KSILESYSRV LESLAYSIGV RIEEVLFMDD ISKDDGDGDD DSCSDKLRLL SKEAASGGSG
501: SLREKLSAPS LFSVSFSGTS TPYRTLSFSA STPSYSPMPL ISPINGGRGG ERAPFLSGRN IRERCGFGPK KALANYLRG

Arabidopsis Description

ROPGEF6Rop guanine nucleotide exchange factor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9M056]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.