Factsheet for VIT_08s0007g01390.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P03750_001	Banana	cytosol	43.87	56.01
VIT_08s0007g01380.t01	Wine grape	nucleus	54.79	53.53
AT5G02010.1	Thale cress	nucleus	47.56	51.83
VIT_13s0019g02710.t01	Wine grape	nucleus	50.59	50.5
Solyc09g011480.2.1	Tomato	nucleus	49.41	50.0
KRH00070	Soybean	nucleus	50.59	49.1
Os01t0849100-01	Rice	cytosol	45.04	49.08
Bra009621.1-P	Field mustard	nucleus	46.05	48.93
CDY10476	Canola	nucleus	46.05	48.93
EES03886	Sorghum	cytosol	44.71	48.81
CDY40325	Canola	nucleus	45.71	48.57
TraesCS3D01G357800.1	Wheat	cytosol	43.36	47.96
TraesCS3B01G396500.1	Wheat	cytosol	43.36	47.87
TraesCS3A01G364400.1	Wheat	nucleus	43.03	47.32
Zm00001d042861_P001	Maize	cytosol	45.21	46.95
KRH65969	Soybean	nucleus	47.23	46.52
TraesCS1D01G280000.1	Wheat	cytosol	43.53	46.33
KRH75747	Soybean	nucleus	45.21	45.98
TraesCS1B01G289900.1	Wheat	cytosol	43.7	45.94
Os05t0454200-01	Rice	nucleus	43.7	45.77
HORVU1Hr1G072910.3	Barley	cytosol	43.03	45.39
PGSC0003DMT400005554	Potato	cytosol, plastid	49.92	45.07
Solyc10g086660.1.1	Tomato	nucleus	50.92	44.62
PGSC0003DMT400049230	Potato	nucleus	51.26	44.08
VIT_09s0002g04310.t01	Wine grape	cytosol	33.61	44.05
EES18335	Sorghum	cytosol	43.36	44.03
Zm00001d010062_P001	Maize	peroxisome	42.69	44.02
TraesCS1A01G280900.2	Wheat	cytosol	42.69	43.12
VIT_18s0001g00550.t01	Wine grape	cytosol	37.82	42.29
VIT_03s0038g03620.t01	Wine grape	cytosol	41.68	42.25
KRH49210	Soybean	nucleus, plastid	50.76	42.24
VIT_15s0046g02530.t01	Wine grape	plastid	34.96	41.27
HORVU3Hr1G085680.2	Barley	plastid	43.36	39.51
VIT_11s0016g03740.t01	Wine grape	nucleus	35.46	38.02
Zm00001d047899_P001	Maize	cytosol	15.8	33.81
Zm00001d023356_P001	Maize	cytosol	19.66	32.96
Zm00001d037119_P001	Maize	plastid	21.34	29.47
Zm00001d049679_P001	Maize	plastid	21.34	28.73
VIT_02s0087g00460.t01	Wine grape	mitochondrion, nucleus	30.59	19.96
GSMUA_Achr6P14950_001	Banana	mitochondrion	43.19	19.35

Protein Annotations

Gene3D:1.20.58.2010	MapMan:27.4.3.1	EMBL:AM472768	ProteinID:CAN63897	ProteinID:CAN63897.1	ProteinID:CCB55535
ProteinID:CCB55535.1	UniProt:F6HL18	EMBL:FN595991	GO:GO:0003674	GO:GO:0005085	GO:GO:0005089
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0065009	InterPro:IPR005512	PFAM:PF03759	InterPro:PRONE_dom	PFscan:PS51334	PANTHER:PTHR33101
PANTHER:PTHR33101:SF14	InterPro:RopGEF	UniParc:UPI00021090FA	ArrayExpress:VIT_08s0007g01390	EnsemblPlantsGene:VIT_08s0007g01390	EnsemblPlants:VIT_08s0007g01390.t01
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr8:-:15461643..15470140

Molecular Weight (calculated)

67271.0 Da

IEP (calculated)

7.076

GRAVY (calculated)

-0.570

Length

595 amino acids

Sequence
(BLAST)

001: MDGSIEKGNV IQQWKLEFGN HEDGTKESRS WSGSPTRKGT SNEEESHRSP RHSSSSLPLD WPLQKVEESH FVRSDDIHGA EKPHLHEMKF EKHCSEISEV
101: EMMKARFSRL LLGEDMSGRG IGVCTALAIS KGITNLYATL FGKIWKLEPL DPMKKAMWRR DKEWLLSVSD HIVEFTPAWQ KFPDGSEGEV MTCRLRADLY
201: ANLPALRKLD DMLIETLDSF EDTEFWYVNQ GILSPKADGS SSSPGHLHHQ EEKCWLPVPH VPPTGLSENS RKHLQQKRDF TNQIRKAVRA INSTTLAEME
301: VPEPYLEALP KNVRASLGDL IYRYITSDQF SPECVLSHLD FTSEQALEVA NRVEASIIVW HQRHYPKPVS IKSQPTSRQS WKAEKELMAD ADKTESIAER
401: AESLLFCIKQ RFPGLPQTTL EMSKVQFNKD IGKSILESYS RVLESLAADI LVRVDDLLYM DDLTNQFLPI TRVGVTAHES ISIPYLLPVS STPIETAVTT
501: SGVSQGQQVI PAKAETSPFF KPSKLLLRGL SKRKPSTDFQ NTERKGKDND SQKNNGKWLV GIYHYKMEVG TTGNIMMRGI GSGRGHRDLQ GKLQN

Best Arabidopsis Sequence Match ( AT5G02010.1 )
(BLAST)

001: MDGSSENLPE VEEKGRESSC CSSETTRQEE EEQSPSCTED FTASPVSSRW SVKNIDGEKK KIRSDSRVSE VEMMKERFSK LLLGEDMSGS GNGVCTALAI
101: SNAITNLCAT LFGQLWRLEP LPTEKKEMWR REMEWLLCVS DHIVEMTPTW QTFPDGTKLE IMTCRPRSDL YVNLPALRKL DNMLLEILDS FEETEFWYVD
201: QGIMAHESAA DGSSSFRKSF QRQEDKWWLP VPRVSPGGLQ ENSRKQLQHK RDCTNQILKA AMAINSITLA DMEIPESYLE SLPRKGRSCL GDLIYRYISS
301: DQFSPECLLD CLDLSSEHQA IEIANRVESS IYLWHKRTNS KPATNTKTSW EMVKELMVDA DKLELMADRA ESLLLSLKQR FPGLPQTALD MSKIQYNKDI
401: GKSILESYSR VLESLAFNIV ARIDDLLFVD DLTRHSSDQI PTTLGNNGND APKSIAVPVS NYTTPSYSPS KQELRSSITV PPSPSRFKIP HSSSVKRVLT
501: AYVTKNEPRL KNLPLERSSR SSSSERLSLE KCMKESLNVS NLDPGI

Arabidopsis Description

ROPGEF7Rop guanine nucleotide exchange factor 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZN0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.