Factsheet for TraesCS1B01G289900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G280000.1	Wheat	cytosol	97.17	98.39
HORVU1Hr1G072910.3	Barley	cytosol	94.7	95.04
TraesCS1A01G280900.2	Wheat	cytosol	94.17	90.49
EES18335	Sorghum	cytosol	78.98	76.28
Os05t0454200-01	Rice	nucleus	75.62	75.35
Zm00001d010062_P001	Maize	peroxisome	73.85	72.44
TraesCS3B01G396500.1	Wheat	cytosol	66.61	69.94
GSMUA_Achr9P03750_001	Banana	cytosol	53.0	64.38
Solyc08g006550.2.1	Tomato	nucleus	53.18	56.79
PGSC0003DMT400067654	Potato	nucleus	53.36	56.77
AT5G02010.1	Thale cress	nucleus	53.36	55.31
VIT_13s0019g02710.t01	Wine grape	nucleus	57.77	54.87
Bra009621.1-P	Field mustard	nucleus	53.71	54.29
CDY10476	Canola	nucleus	53.71	54.29
CDY40325	Canola	nucleus	53.53	54.11
VIT_08s0007g01380.t01	Wine grape	nucleus	57.6	53.53
KRH73109	Soybean	nucleus	51.94	52.78
TraesCS5B01G339200.1	Wheat	cytosol	44.88	52.59
Solyc09g011480.2.1	Tomato	nucleus	53.71	51.7
KRG97804	Soybean	nucleus	53.53	51.1
KRH31060	Soybean	nucleus	53.89	51.0
KRH00070	Soybean	nucleus	54.77	50.57
Bra009152.1-P	Field mustard	cytosol, plastid	52.83	50.25
KRH15022	Soybean	nucleus	49.65	50.09
KRH65969	Soybean	nucleus	52.47	49.17
KRH75747	Soybean	nucleus	50.71	49.06
AT5G05940.1	Thale cress	cytosol	52.65	48.77
TraesCS2B01G426300.1	Wheat	cytosol	39.4	47.96
Solyc10g086660.1.1	Tomato	nucleus	57.07	47.57
CDX70109	Canola	cytosol	52.83	47.24
CDY40246	Canola	cytosol, plastid	46.29	47.04
PGSC0003DMT400049230	Potato	nucleus	57.42	46.97
CDY41197	Canola	cytosol, plastid	45.94	46.93
CDX98888	Canola	cytosol	52.83	46.87
PGSC0003DMT400005554	Potato	cytosol, plastid	54.06	46.43
Bra007183.1-P	Field mustard	cytosol, plastid	46.29	45.88
TraesCS1B01G222700.1	Wheat	plastid	38.52	45.61
TraesCS6B01G449200.1	Wheat	nucleus	37.81	45.44
AT3G55660.1	Thale cress	cytosol, plastid	46.47	45.42
VIT_08s0007g01390.t01	Wine grape	nucleus	45.94	43.7
KRH49210	Soybean	nucleus, plastid	54.95	43.5
TraesCS3B01G331000.1	Wheat	nucleus	33.04	40.22
TraesCS3B01G304200.1	Wheat	plastid	34.63	37.98
TraesCS1B01G420200.1	Wheat	nucleus, plastid	35.87	35.93
TraesCS6B01G298000.1	Wheat	cytosol	31.63	32.97
GSMUA_Achr6P14950_001	Banana	mitochondrion	53.36	22.74

Protein Annotations

EnsemblPlants:TraesCS1B01G289900.1	EnsemblPlantsGene:TraesCS1B01G289900	Gene3D:1.20.58.1310	Gene3D:1.20.58.2010	GO:GO:0003674	GO:GO:0005089
GO:GO:0005488	GO:GO:0005515	InterPro:IPR005512	InterPro:PRONE_dom	InterPro:RopGEF	PANTHER:PTHR33101
PANTHER:PTHR33101:SF27	PFAM:PF03759	PFscan:PS51334	SEG:seg	MapMan:27.4.3.1	:

Description

No Description!

Coordinates

chr1B:+:505625933..505629144

Molecular Weight (calculated)

62087.9 Da

IEP (calculated)

5.470

GRAVY (calculated)

-0.378

Length

566 amino acids

Sequence
(BLAST)

001: MARGGGGAAE EEEEEEEGMA VSETLTAESE ECRRGSSSSA SSVAASSDSY CPPDEWQQVA IKTCVTDDAV AAMAKAKPPA PGKEIPPLAE PERHRAPEVE
101: LMKERFSKLL LGEDMSGSGK GVCTALAISN AITNLCATIF GQLWRLEPLL PEKKAMWRRE MDWLLCVSDH IVELVPTWQT FPDGTRLEIM TSRPRSDLYI
201: NLPALRKLDH MLLETLESFR DTEFWYVDQG ICAPDCDGSA SFRRPAHRRD EKWWLPVPRV PPGGLREATR RQLEHKRDAA NQILKAAMAI NSNALAEMDV
301: PDSYHDSLPK NGRATLGDII YRYITSEQFS PDCLLDCLDL SSEYQAVEIA NRVEAAVYVW RRRGTAAKSA GTKSSWGMVK DMIMDTEKRG DLLAERAEGL
401: LISLKQRFPG LTQTSLDMSK IQYNKDVGKS ILESYSRVME SLASNIIARI DDLLYVDELS KQTDQKLPAG VADDGKIACK NKKAAAMAPS PAYAVPASGT
501: TYVTPSFSPA QLSSPSKIGR ALLVDRRAHH GRAAKRSALA DHGGGPEVKG MLVTSPVFDA PLGTEL

Best Arabidopsis Sequence Match ( AT5G02010.1 )
(BLAST)

001: MDGSSENLPE VEEKGRESSC CSSETTRQEE EEQSPSCTED FTASPVSSRW SVKNIDGEKK KIRSDSRVSE VEMMKERFSK LLLGEDMSGS GNGVCTALAI
101: SNAITNLCAT LFGQLWRLEP LPTEKKEMWR REMEWLLCVS DHIVEMTPTW QTFPDGTKLE IMTCRPRSDL YVNLPALRKL DNMLLEILDS FEETEFWYVD
201: QGIMAHESAA DGSSSFRKSF QRQEDKWWLP VPRVSPGGLQ ENSRKQLQHK RDCTNQILKA AMAINSITLA DMEIPESYLE SLPRKGRSCL GDLIYRYISS
301: DQFSPECLLD CLDLSSEHQA IEIANRVESS IYLWHKRTNS KPATNTKTSW EMVKELMVDA DKLELMADRA ESLLLSLKQR FPGLPQTALD MSKIQYNKDI
401: GKSILESYSR VLESLAFNIV ARIDDLLFVD DLTRHSSDQI PTTLGNNGND APKSIAVPVS NYTTPSYSPS KQELRSSITV PPSPSRFKIP HSSSVKRVLT
501: AYVTKNEPRL KNLPLERSSR SSSSERLSLE KCMKESLNVS NLDPGI

Arabidopsis Description

ROPGEF7Rop guanine nucleotide exchange factor 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZN0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.