Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- cytosol 2
- mitochondrion 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY40246 | Canola | cytosol, plastid | 86.53 | 89.95 |
| CDY41197 | Canola | cytosol, plastid | 86.01 | 89.89 |
| Bra007183.1-P | Field mustard | cytosol, plastid | 88.08 | 89.32 |
| GSMUA_Achr9P03750_001 | Banana | cytosol | 45.25 | 56.22 |
| PGSC0003DMT400067654 | Potato | nucleus | 50.95 | 55.45 |
| Solyc08g006550.2.1 | Tomato | nucleus | 50.43 | 55.09 |
| KRH73109 | Soybean | nucleus | 50.26 | 52.24 |
| VIT_13s0019g02710.t01 | Wine grape | nucleus | 52.5 | 51.01 |
| Os01t0849100-01 | Rice | cytosol | 48.01 | 50.92 |
| EES03886 | Sorghum | cytosol | 47.67 | 50.64 |
| TraesCS3B01G396500.1 | Wheat | cytosol | 46.63 | 50.09 |
| TraesCS3D01G357800.1 | Wheat | cytosol | 46.29 | 49.81 |
| KRG97804 | Soybean | nucleus | 50.95 | 49.75 |
| TraesCS3A01G364400.1 | Wheat | nucleus | 46.46 | 49.72 |
| AT5G02010.1 | Thale cress | nucleus | 46.63 | 49.45 |
| KRH15022 | Soybean | nucleus | 47.84 | 49.38 |
| KRH31060 | Soybean | nucleus | 50.95 | 49.33 |
| Zm00001d042861_P001 | Maize | cytosol | 47.15 | 47.64 |
| AT5G05940.1 | Thale cress | cytosol | 50.26 | 47.63 |
| TraesCS1D01G280000.1 | Wheat | cytosol | 45.42 | 47.05 |
| TraesCS1B01G289900.1 | Wheat | cytosol | 45.42 | 46.47 |
| Os05t0454200-01 | Rice | nucleus | 45.42 | 46.3 |
| HORVU1Hr1G072910.3 | Barley | cytosol | 44.91 | 46.1 |
| AT4G00460.2 | Thale cress | nucleus | 37.13 | 45.45 |
| Zm00001d010062_P001 | Maize | peroxisome | 45.25 | 45.41 |
| EES18335 | Sorghum | cytosol | 45.94 | 45.39 |
| TraesCS1A01G280900.2 | Wheat | cytosol | 44.91 | 44.14 |
| AT4G38430.1 | Thale cress | nucleus | 40.93 | 43.25 |
| HORVU3Hr1G085680.2 | Barley | plastid | 47.15 | 41.81 |
| AT1G01700.4 | Thale cress | nucleus | 36.44 | 40.97 |
| AT2G45890.1 | Thale cress | nucleus, plastid | 32.64 | 40.82 |
| AT4G13240.1 | Thale cress | nucleus | 33.33 | 37.33 |
| AT3G24620.1 | Thale cress | nucleus | 33.33 | 36.9 |
| AT5G19560.4 | Thale cress | mitochondrion | 31.95 | 36.13 |
| AT1G79860.1 | Thale cress | nucleus | 31.95 | 35.92 |
| AT1G52240.1 | Thale cress | nucleus | 33.16 | 35.36 |
| AT3G16130.1 | Thale cress | nucleus | 31.78 | 34.2 |
| Zm00001d047899_P001 | Maize | cytosol | 15.2 | 31.65 |
| Zm00001d023356_P001 | Maize | cytosol | 19.17 | 31.27 |
| AT1G31650.1 | Thale cress | mitochondrion, nucleus | 28.32 | 28.47 |
| Zm00001d037119_P001 | Maize | plastid | 20.55 | 27.61 |
| Zm00001d049679_P001 | Maize | plastid | 20.38 | 26.7 |
| GSMUA_Achr6P14950_001 | Banana | mitochondrion | 44.39 | 19.35 |
Protein Annotations
| Gene3D:1.20.58.2010 | MapMan:27.4.3.1 | EntrezGene:824732 | ProteinID:AEE79417.1 | ArrayExpress:AT3G55660 | EnsemblPlantsGene:AT3G55660 |
| RefSeq:AT3G55660 | TAIR:AT3G55660 | RefSeq:AT3G55660-TAIR-G | EnsemblPlants:AT3G55660.1 | TAIR:AT3G55660.1 | Symbol:ATROPGEF6 |
| EMBL:BT020279 | EMBL:BT021117 | ProteinID:CAB81591.1 | GO:GO:0003674 | GO:GO:0005085 | GO:GO:0005089 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 | GO:GO:0065009 | InterPro:IPR005512 | RefSeq:NP_191125.1 |
| PFAM:PF03759 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007115 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0009062 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0025022 | InterPro:PRONE_dom | PFscan:PS51334 | PANTHER:PTHR33101 |
| PANTHER:PTHR33101:SF1 | UniProt:Q9M056 | InterPro:RopGEF | UniParc:UPI00000A2A40 | SEG:seg | : |
Description
ROPGEF6Rop guanine nucleotide exchange factor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9M056]
Coordinates
chr3:-:20648830..20651484
Molecular Weight (calculated)
64290.5 Da
IEP (calculated)
7.727
GRAVY (calculated)
-0.396
Length
579 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDNSCIGFE GSKRFGETSK RIIGLIDSVT ESTTDSSLSS SSSGVGSSSG RSSVAERSVS SPPTKSQILG WPLGQGSWRK SSGKMKKKTP TKIDDFGFKR
101: VGTETSEIEL LKERMAKLLL GEDMSGSGEG VCPALAISNA ITNLYAAILG QQWRLEPIPS EKKLMWRREI EVLLSVSDHI VELVPSFQNF PNGNKIEVMN
201: CRPRSDLFTC LPALRKLDNM LIEILDSFGE TEFWYVDQGI VAAESARSNS FREDGDKWWL PLPRVPSDGL TEQTRKKLDH TREFTNQILK ACMSINSIAL
301: AEMEVPQSYL EALPKNGRSC LGDFLYRNIT SDNFSADHLL ESIDLSSELA VVEMANRVEA SMYVWRRRAH SRHLISLYRS TSTRWGMIVK EMMMHQTDGD
401: KREIFAERAE SLLIRLKQRF PGLRQTALDT SKIQYNKDVG KSILESYSRV LESLAYSIGV RIEEVLFMDD ISKDDGDGDD DSCSDKLRLL SKEAASGGSG
501: SLREKLSAPS LFSVSFSGTS TPYRTLSFSA STPSYSPMPL ISPINGGRGG ERAPFLSGRN IRERCGFGPK KALANYLRG
101: VGTETSEIEL LKERMAKLLL GEDMSGSGEG VCPALAISNA ITNLYAAILG QQWRLEPIPS EKKLMWRREI EVLLSVSDHI VELVPSFQNF PNGNKIEVMN
201: CRPRSDLFTC LPALRKLDNM LIEILDSFGE TEFWYVDQGI VAAESARSNS FREDGDKWWL PLPRVPSDGL TEQTRKKLDH TREFTNQILK ACMSINSIAL
301: AEMEVPQSYL EALPKNGRSC LGDFLYRNIT SDNFSADHLL ESIDLSSELA VVEMANRVEA SMYVWRRRAH SRHLISLYRS TSTRWGMIVK EMMMHQTDGD
401: KREIFAERAE SLLIRLKQRF PGLRQTALDT SKIQYNKDVG KSILESYSRV LESLAYSIGV RIEEVLFMDD ISKDDGDGDD DSCSDKLRLL SKEAASGGSG
501: SLREKLSAPS LFSVSFSGTS TPYRTLSFSA STPSYSPMPL ISPINGGRGG ERAPFLSGRN IRERCGFGPK KALANYLRG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.