Factsheet for PGSC0003DMT400067654

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g006550.2.1	Tomato	nucleus	96.24	96.6
GSMUA_Achr9P03750_001	Banana	cytosol	60.34	68.88
VIT_13s0019g02710.t01	Wine grape	nucleus	75.75	67.62
KRH73109	Soybean	nucleus	67.11	64.09
KRG97804	Soybean	nucleus	70.11	62.9
KRH31060	Soybean	nucleus	69.92	62.21
KRH15022	Soybean	nucleus	64.29	60.96
EES03886	Sorghum	cytosol	59.96	58.53
TraesCS3B01G396500.1	Wheat	cytosol	59.02	58.26
TraesCS3A01G364400.1	Wheat	nucleus	59.02	58.04
TraesCS3D01G357800.1	Wheat	cytosol	58.65	57.99
Os01t0849100-01	Rice	cytosol	59.4	57.88
Bra009152.1-P	Field mustard	cytosol, plastid	64.29	57.48
Zm00001d042861_P001	Maize	cytosol	59.21	54.97
AT5G05940.1	Thale cress	cytosol	62.97	54.83
CDX70109	Canola	cytosol	64.66	54.34
TraesCS1D01G280000.1	Wheat	cytosol	56.77	54.02
CDX98888	Canola	cytosol	64.66	53.92
Os05t0454200-01	Rice	nucleus	57.52	53.87
HORVU1Hr1G072910.3	Barley	cytosol	56.77	53.55
TraesCS1B01G289900.1	Wheat	cytosol	56.77	53.36
EES18335	Sorghum	cytosol	57.89	52.56
Zm00001d010062_P001	Maize	peroxisome	56.58	52.17
CDY41197	Canola	cytosol, plastid	54.14	51.99
CDY40246	Canola	cytosol, plastid	53.95	51.53
AT3G55660.1	Thale cress	cytosol, plastid	55.45	50.95
TraesCS1A01G280900.2	Wheat	cytosol	56.02	50.59
Bra007183.1-P	Field mustard	cytosol, plastid	53.95	50.26
PGSC0003DMT400000136	Potato	nucleus	43.8	48.85
HORVU3Hr1G085680.2	Barley	plastid	59.4	48.39
PGSC0003DMT400049230	Potato	nucleus	62.78	48.27
PGSC0003DMT400005554	Potato	cytosol, plastid	59.4	47.95
PGSC0003DMT400047997	Potato	nucleus	48.5	44.71
PGSC0003DMT400025800	Potato	nucleus	43.61	42.26
PGSC0003DMT400042632	Potato	nucleus	35.71	40.6
PGSC0003DMT400006531	Potato	cytosol	36.47	38.65
Zm00001d047899_P001	Maize	cytosol	19.92	38.13
PGSC0003DMT400040374	Potato	nucleus	33.27	37.66
PGSC0003DMT400001020	Potato	nucleus	38.35	36.76
PGSC0003DMT400097197	Potato	nucleus	38.53	36.41
Zm00001d023356_P001	Maize	cytosol	22.74	34.08
PGSC0003DMT400053650	Potato	cytosol, nucleus, plastid	35.9	33.93
Zm00001d037119_P001	Maize	plastid	26.69	32.95
PGSC0003DMT400075550	Potato	extracellular	12.41	32.04
Zm00001d049679_P001	Maize	plastid	26.13	31.45
GSMUA_Achr6P14950_001	Banana	mitochondrion	57.14	22.89

Protein Annotations

Gene3D:1.20.58.2010	EntrezGene:102600720	MapMan:27.4.3.1	GO:GO:0003674	GO:GO:0005085	GO:GO:0005089
GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009	InterPro:IPR005512	UniProt:M1CHM9
PFAM:PF03759	EnsemblPlantsGene:PGSC0003DMG400026309	PGSC:PGSC0003DMG400026309	EnsemblPlants:PGSC0003DMT400067654	InterPro:PRONE_dom	PFscan:PS51334
PANTHER:PTHR33101	PANTHER:PTHR33101:SF1	InterPro:RopGEF	UniParc:UPI00029540F2	RefSeq:XP_006357105.1	SEG:seg

Description

ROPGEF5 (ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 5) [Source:PGSC_GENE;Acc:PGSC0003DMG400026309]

Coordinates

chr8:-:2027630..2030242

Molecular Weight (calculated)

59680.9 Da

IEP (calculated)

8.098

GRAVY (calculated)

-0.485

Length

532 amino acids

Sequence
(BLAST)

001: MENKTENENG PSSESSVWSR SSSDESKEKD SSSSPSSPLG WPIRKAQKDV VNSNISELEM MKERFSKLLL GEDMSGSGKG VCTSLAISNA ITNLCATIFG
101: QLWRLEPLPQ EKKSMWRREM EWLVAVSDHI VELKPSWQTF HDGSKLEVMT SRPRADLFIN LPALRKLDNM LIEILDSFTN TEFWYVDQGI IAAEDDGSAS
201: FRKAIQRQQD KWWLPVPRVP HGGLLDDTRK QLNHKRECAS QILKAAMSIN SITLAEMEVP ESYLDALPKN GRACLGDVIY RYITSEHFSS ECLLDCLDLS
301: TECVALEIAN RVEASIYVWR RRHHPRPPTN PNRSTAKSSW EMVKDLVVDG DKRESLAERA ENLLLCLKQR FPGLTQTTLD TSKIQYNKDV GKCILESYSR
401: VLESLAFNIV ARIDDLLHVD ALTRNSSVPT GNVINHKKVS IPYSGTPYRT PNFSPVPLIS PVRGERTPFL SANSNKLTGR GFGVKRVLSN YLGCEAKTKN
501: SGNATSNKSS DHTIQSPELY LQAGKGLRSI DR

Best Arabidopsis Sequence Match ( AT5G05940.1 )
(BLAST)

001: MENLVKSCAG IEKKRSNLTP SMEDILTESK ERSSTSGASY ESSSTTTVAS SSPPPPPSQI LGWPIRKASF RKNSKESVNF DHKKLTLHDD SGFKAKEMNS
101: ADVEMMKERF AKLLLGEDMS GSGKGVCTAL AISNAITNLC ATIFGQLWRL EPLSSEKKEM WRREMEWILS VSDHIVELTP STQTYPDGNK FEVMTCRPRF
201: DLFINLPALR KLDNMLLDIL ASFKKTEFWY VDQGIVASEN DGSASFRRKI QRQEEKWWLP VPRLAPNGLT EEARTELNHK RECATQILKA AMAINSLALT
301: EMDVPKSYLE TLPKNGRSCL GDVIYRYVTS DKFSAESLLD CLDLSSEHIA LDIANRVEAS IYVWRRRVQT KLGVNNNTSS TTPKLTWEMV KELMAAGDKR
401: GLLVERSETL LRCLKQRFPS LTQTSLDISK IQWNKDIGKS ILESYSRALE SLASNIIARI DDLLYVDDLT KQSDDNNLLS SPAVSSIIAH KKVVPLPYLI
501: SASGTPYRTS FSTTPGFSPS MISPKKGERR TPYSSKDTNK IIEKGLPSRG YGVRRVLNNY LGMESKLKIC VNPSDNADTA VINQISKDVE EEKKRNSTSV
601: HQKGPPKYTV S

Arabidopsis Description

ROPGEF5Rop guanine nucleotide exchange factor 5 [Source:UniProtKB/Swiss-Prot;Acc:F4K295]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.