Factsheet for PGSC0003DMT400001020

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400063227
PGSC0003DMT400063229

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24620.1	PGSC0003DMT400063227	AT5G62880.1	22500990
AT3G24620.1	PGSC0003DMT400063229	AT5G62880.1	22500990
AT4G13240.1	PGSC0003DMT400063227	AT5G62880.1	22500990
AT4G13240.1	PGSC0003DMT400063229	AT5G62880.1	22500990

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g007150.1.1	Tomato	nucleus	96.4	96.4
PGSC0003DMT400040374	Potato	nucleus	58.92	69.57
GSMUA_Achr6P14020_001	Banana	cytosol	53.69	69.14
GSMUA_Achr5P06900_001	Banana	cytosol	52.43	69.12
GSMUA_Achr2P09130_001	Banana	cytosol	47.57	67.52
VIT_09s0002g04310.t01	Wine grape	cytosol	54.59	66.74
GSMUA_Achr4P10530_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	51.53	66.36
GSMUA_Achr3P03410_001	Banana	nucleus	58.02	63.64
PGSC0003DMT400042632	Potato	nucleus	52.79	62.61
TraesCS6A01G196000.1	Wheat	cytosol	49.01	62.39
OQU84790	Sorghum	cytosol	48.65	61.36
CDY03296	Canola	nucleus	36.22	60.73
PGSC0003DMT400006531	Potato	cytosol	54.59	60.36
AT4G13240.1	Thale cress	nucleus	55.5	59.57
GSMUA_Achr3P15410_001	Banana	nucleus	53.15	59.48
Bra036671.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	53.87	59.21
CDY03297	Canola	mitochondrion	54.95	58.32
CDY39783	Canola	mitochondrion	55.14	58.29
Bra013249.1-P	Field mustard	nucleus, plastid	54.23	58.11
KRH39304	Soybean	nucleus	54.41	58.08
Zm00001d053307_P002	Maize	cytosol, plastid	50.45	57.97
AT3G24620.1	Thale cress	nucleus	54.41	57.74
CDY46477	Canola	nucleus	54.05	57.58
Bra015068.1-P	Field mustard	nucleus	53.87	57.39
CDX77402	Canola	nucleus	53.87	57.39
KRH48369	Soybean	mitochondrion	58.02	57.3
TraesCSU01G211800.1	Wheat	cytosol	33.33	56.75
TraesCS6D01G183300.1	Wheat	mitochondrion	51.53	56.19
HORVU6Hr1G050860.4	Barley	mitochondrion	50.63	55.86
TraesCSU01G217800.1	Wheat	cytosol	34.05	55.59
TraesCSU01G211700.1	Wheat	cytosol	34.05	55.59
PGSC0003DMT400097197	Potato	nucleus	56.04	55.24
Os02t0272300-01	Rice	plasma membrane	50.99	55.17
Zm00001d016001_P002	Maize	mitochondrion	50.63	52.62
CDX93028	Canola	nucleus	38.56	45.15
PGSC0003DMT400000136	Potato	nucleus	32.97	38.36
PGSC0003DMT400067654	Potato	nucleus	36.76	38.35
PGSC0003DMT400047997	Potato	nucleus	38.02	36.57
PGSC0003DMT400025800	Potato	nucleus	35.86	36.25
PGSC0003DMT400053650	Potato	cytosol, nucleus, plastid	32.07	31.62
PGSC0003DMT400005554	Potato	cytosol, plastid	36.58	30.8
PGSC0003DMT400049230	Potato	nucleus	36.76	29.48
PGSC0003DMT400075550	Potato	extracellular	10.45	28.16

Protein Annotations

Gene3D:1.20.58.1310	Gene3D:1.20.58.2010	EntrezGene:102599399	MapMan:27.4.3.1	GO:GO:0003674	GO:GO:0005085
GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009	InterPro:IPR005512
UniProt:M0ZHR1	PFAM:PF03759	EnsemblPlantsGene:PGSC0003DMG400000377	PGSC:PGSC0003DMG400000377	EnsemblPlants:PGSC0003DMT400001020	InterPro:PRONE_dom
PFscan:PS51334	PANTHER:PTHR33101	PANTHER:PTHR33101:SF10	InterPro:RopGEF	UniParc:UPI0002962A6D	RefSeq:XP_006353564.2
SEG:seg	:	:	:	:	:

Description

Pollen-specific kinase partner protein [Source:PGSC_GENE;Acc:PGSC0003DMG400000377]

Coordinates

chr12:-:4437486..4442256

Molecular Weight (calculated)

62713.4 Da

IEP (calculated)

6.718

GRAVY (calculated)

-0.573

Length

555 amino acids

Sequence
(BLAST)

001: MVREIYKISK SRSFNIRKIF EGRHGHSHHH VVLENNGHGK DMKFRSQLGA KSSSSLELQQ LSSILNKSVD HVSRFAKEGE RSRNIHKDKQ SSEMEKMKER
101: FAKLLLGEDM SGGGKGVSSA LALSNAITNL AASVFGEQRK LEPTSEERKG RWKKEINWLL SVSDYIVEFV PSQQKSKDGT NIEVMVTQQR RDLFMNIPAL
201: KKLDAMLIDI LENFKDENEF WYVSKDADES EKGVQRDDKW WLPTIKVPPE GLSDTCRKWL QYQKDCVNQV HRASMAINAQ ILSEMEIPEN YIESLPKNGR
301: SSLGDSIYKS ITIEFFEPEQ FLSTMDLSTE HKVLDLKDRI EASIVIWQRK MHLKDGKSTW GLAVSAEKRE LFEERAEAIL LLLKQKFPGI TQSSLDISKI
401: EYNNDIGHSV LESYSRVLES LANTVMSRIE DVLYADSLTQ DPSLAIEKLN LSSADSSPQF PLSGMSSPRE LEAEVLSSAA QTPAAETPTL SDFIGWSEEL
501: GDTGMKKNRS TGNLEAYFKG ENDYNCIGKL ASITPKKLSY TEKIGSGLRS PTSRH

Best Arabidopsis Sequence Match ( AT3G24620.1 )
(BLAST)

001: MVAALERGLS ASKSFNFKRM FDSSSTKQQQ SQTIVVENGD SHIVESNTPE SQNSDSFVES PVESSLPMIS PLTRPGKRSE RQQADMEMMK DRFAKLLLGE
101: DMSGGGKGVS SALALSNAIT NLAASIFGEQ TKLQPMPQDR QARWKKEIDW LLSVTDHIVE FVPSQQTSKD GVCTEIMVTR QRGDLLMNIP ALRKLDAMLI
201: DTLDNFRGHN EFWYVSRDSE EGQQARNDRT NDKWWLPPVK VPPGGLSEPS RRMLYFQKDS VTQVQKAAMA INAQVLSEME IPESYIDSLP KNGRASLGDS
301: IYKSITEEWF DPEQFLAMLD MSTEHKVLDL KNRIEASVVI WKRKLHTKDT KSSWGSAVSL EKRELFEERA ETILVLLKQK FPGLPQSSLD ISKIQFNKDV
401: GQAVLESYSR ILESLAYTVM SRIEDVLYTD TLALKQTLLA EETSDGGRTT ETDSESAGSS NSGEEAEKHD PHSKTLLDFM GWNDNSSKGG DKPTKSPNLT
501: PKKLSYLEKL ENLNGFRSPK DRH

Arabidopsis Description

ROPGEF8Rho guanine nucleotide exchange factor 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV40]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.