Factsheet for GSMUA_Achr5P06900_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P14020_001	Banana	cytosol	79.57	77.73
GSMUA_Achr2P09130_001	Banana	cytosol	67.93	73.15
GSMUA_Achr4P10530_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	74.58	72.85
Solyc07g032730.2.1	Tomato	nucleus	66.75	68.7
GSMUA_Achr3P03410_001	Banana	nucleus	77.2	64.23
KRH44350	Soybean	nucleus	69.12	64.1
GSMUA_Achr3P15410_001	Banana	nucleus	74.11	62.9
Solyc06g066650.2.1	Tomato	nucleus	69.83	62.69
PGSC0003DMT400042632	Potato	nucleus	68.41	61.54
Solyc03g120650.2.1	Tomato	cytosol	71.26	59.76
PGSC0003DMT400006531	Potato	cytosol	70.31	58.96
PGSC0003DMT400040374	Potato	nucleus	64.13	57.45
Solyc12g044270.1.1	Tomato	nucleus	71.02	56.95
KRH23439	Soybean	nucleus	70.55	55.62
KRH09881	Soybean	cytosol	70.31	55.53
KRH39304	Soybean	nucleus	67.7	54.81
VIT_11s0016g03740.t01	Wine grape	nucleus	71.97	54.59
KRH47282	Soybean	nucleus	68.17	53.35
KRH48369	Soybean	mitochondrion	70.78	53.02
PGSC0003DMT400097197	Potato	nucleus	70.31	52.58
PGSC0003DMT400001020	Potato	nucleus	69.12	52.43
Solyc12g007150.1.1	Tomato	nucleus	68.88	52.25
Bra020048.1-P	Field mustard	nucleus	60.57	51.62
CDY42277	Canola	nucleus	60.33	51.42
CDY44926	Canola	nucleus	60.33	51.42
AT5G19560.4	Thale cress	mitochondrion	62.23	51.17
CDY58963	Canola	cytosol	44.18	50.0
CDX88884	Canola	cytosol, plastid	57.96	50.0
Bra006510.1-P	Field mustard	cytosol	57.72	49.8
CDX92519	Canola	plastid	57.72	48.89
CDX70882	Canola	cytosol	58.19	48.51
Bra002246.1-P	Field mustard	plastid	57.72	47.0
GSMUA_Achr9P03750_001	Banana	cytosol	47.27	42.7
GSMUA_Achr5P20570_001	Banana	nucleus	46.08	40.25
GSMUA_Achr2P03580_001	Banana	nucleus	45.37	37.67
GSMUA_Achr8P14490_001	Banana	cytosol	17.1	37.5
GSMUA_Achr10P...	Banana	cytosol	44.18	35.91
GSMUA_Achr8P14480_001	Banana	nucleus	22.09	35.91
GSMUA_Achr1P18140_001	Banana	nucleus	46.79	35.62
GSMUA_Achr3P14650_001	Banana	nucleus	47.27	35.04
GSMUA_Achr11P...	Banana	cytosol	26.13	32.93
GSMUA_Achr11P...	Banana	cytosol	11.64	26.92
GSMUA_Achr6P14950_001	Banana	mitochondrion	47.27	14.98

Protein Annotations

EnsemblPlants:GSMUA_Achr5P06900_001	EnsemblPlants:GSMUA_Achr5T06900_001	EnsemblPlantsGene:GSMUA_Achr5G06900_001	Gene3D:1.20.58.1310	Gene3D:1.20.58.2010	GO:GO:0003674
GO:GO:0005085	GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009
InterPro:IPR005512	InterPro:PRONE_dom	InterPro:RopGEF	PANTHER:PTHR33101	PANTHER:PTHR33101:SF10	PFAM:PF03759
PFscan:PS51334	SEG:seg	UniParc:UPI000294D664	UniProt:M0SWB9	MapMan:27.4.3.1	:

Description

Rop guanine nucleotide exchange factor 1 [Source:GMGC_GENE;Acc:GSMUA_Achr5G06900_001]

Coordinates

chr5:+:5015185..5017096

Molecular Weight (calculated)

47970.4 Da

IEP (calculated)

6.301

GRAVY (calculated)

-0.502

Length

421 amino acids

Sequence
(BLAST)

001: MELMKERFTK LLLGEDMSGG GKGVSSALAL SNAITNLAAS VFGEQWRLEP MSAERKARWR KEIGWLLSVT DYIVEFVPSR QTSKDGSIME IMITQQRKDL
101: QLNIPALRKL DAMLIGYLDN FKDQNEFWYV SRDADESEKG AQRKDDKWWL PTVRVPPNGL SDVSKRWLQF QKESVNQVLK AAMAINAQVL MEMEVPEAYI
201: DSLPKNGRAS LGESIYRNIT DDVFDPGEFL ETMDLSTEHK VLDLKNRIEA SIVIWKRKMH DKDSKSTWGS AVSLEKREQF EERAETILLL IKQRFPGLPQ
301: TSLDISKIQY NRDVGLSILE SYSRILESLA FTVMSRIEDV IYADSLAQNP ATKNSNRRQS LHDAAAVKKL HAKEEPEKVE SPSSMTLSDF MGWNFEPEPV
401: MKKNSGYVEH VGGMRSPTAR H

Best Arabidopsis Sequence Match ( AT3G24620.1 )
(BLAST)

001: MVAALERGLS ASKSFNFKRM FDSSSTKQQQ SQTIVVENGD SHIVESNTPE SQNSDSFVES PVESSLPMIS PLTRPGKRSE RQQADMEMMK DRFAKLLLGE
101: DMSGGGKGVS SALALSNAIT NLAASIFGEQ TKLQPMPQDR QARWKKEIDW LLSVTDHIVE FVPSQQTSKD GVCTEIMVTR QRGDLLMNIP ALRKLDAMLI
201: DTLDNFRGHN EFWYVSRDSE EGQQARNDRT NDKWWLPPVK VPPGGLSEPS RRMLYFQKDS VTQVQKAAMA INAQVLSEME IPESYIDSLP KNGRASLGDS
301: IYKSITEEWF DPEQFLAMLD MSTEHKVLDL KNRIEASVVI WKRKLHTKDT KSSWGSAVSL EKRELFEERA ETILVLLKQK FPGLPQSSLD ISKIQFNKDV
401: GQAVLESYSR ILESLAYTVM SRIEDVLYTD TLALKQTLLA EETSDGGRTT ETDSESAGSS NSGEEAEKHD PHSKTLLDFM GWNDNSSKGG DKPTKSPNLT
501: PKKLSYLEKL ENLNGFRSPK DRH

Arabidopsis Description

ROPGEF8Rho guanine nucleotide exchange factor 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV40]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.