Factsheet for GSMUA_Achr2P09130_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P06900_001	Banana	cytosol	73.15	67.93
GSMUA_Achr4P10530_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	74.42	67.52
GSMUA_Achr6P14020_001	Banana	cytosol	73.15	66.36
GSMUA_Achr3P15410_001	Banana	nucleus	81.84	64.52
Solyc07g032730.2.1	Tomato	nucleus	64.71	61.86
KRH44350	Soybean	nucleus	66.5	57.27
GSMUA_Achr3P03410_001	Banana	nucleus	72.63	56.13
Solyc06g066650.2.1	Tomato	nucleus	66.75	55.65
PGSC0003DMT400042632	Potato	nucleus	66.24	55.34
Solyc03g120650.2.1	Tomato	cytosol	67.26	52.39
PGSC0003DMT400006531	Potato	cytosol	66.24	51.59
KRH39304	Soybean	nucleus	67.77	50.96
PGSC0003DMT400040374	Potato	nucleus	60.87	50.64
Solyc12g044270.1.1	Tomato	nucleus	66.75	49.71
KRH09881	Soybean	cytosol	65.98	48.41
CDY44926	Canola	nucleus	61.13	48.38
Bra020048.1-P	Field mustard	nucleus	61.13	48.38
KRH23439	Soybean	nucleus	65.73	48.13
CDY42277	Canola	nucleus	60.61	47.98
KRH47282	Soybean	nucleus	65.73	47.77
PGSC0003DMT400001020	Potato	nucleus	67.52	47.57
Solyc12g007150.1.1	Tomato	nucleus	67.26	47.39
CDX88884	Canola	cytosol, plastid	59.08	47.34
Bra006510.1-P	Field mustard	cytosol	59.08	47.34
KRH48369	Soybean	mitochondrion	68.03	47.33
VIT_11s0016g03740.t01	Wine grape	nucleus	67.01	47.21
AT5G19560.4	Thale cress	mitochondrion	60.61	46.29
CDX92519	Canola	plastid	58.57	46.08
CDY58963	Canola	cytosol	43.73	45.97
PGSC0003DMT400097197	Potato	nucleus	65.98	45.83
CDX70882	Canola	cytosol	58.82	45.54
Bra002246.1-P	Field mustard	plastid	58.57	44.29
GSMUA_Achr9P03750_001	Banana	cytosol	48.85	40.99
GSMUA_Achr5P20570_001	Banana	nucleus	46.29	37.55
GSMUA_Achr2P03580_001	Banana	nucleus	46.55	35.9
GSMUA_Achr8P14480_001	Banana	nucleus	23.53	35.52
GSMUA_Achr8P14490_001	Banana	cytosol	17.14	34.9
GSMUA_Achr10P...	Banana	cytosol	45.52	34.36
GSMUA_Achr1P18140_001	Banana	nucleus	48.59	34.36
GSMUA_Achr3P14650_001	Banana	nucleus	48.59	33.45
GSMUA_Achr11P...	Banana	cytosol	27.37	32.04
GSMUA_Achr11P...	Banana	cytosol	11.0	23.63
GSMUA_Achr6P14950_001	Banana	mitochondrion	48.85	14.38

Protein Annotations

EnsemblPlants:GSMUA_Achr2P09130_001	EnsemblPlants:GSMUA_Achr2T09130_001	EnsemblPlantsGene:GSMUA_Achr2G09130_001	Gene3D:1.20.58.1310	Gene3D:1.20.58.2010	GO:GO:0003674
GO:GO:0005085	GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009
InterPro:IPR005512	InterPro:PRONE_dom	InterPro:RopGEF	PANTHER:PTHR33101	PANTHER:PTHR33101:SF10	PFAM:PF03759
PFscan:PS51334	UniParc:UPI000294E68E	UniProt:M0S6F4	MapMan:27.4.3.1	:	:

Description

Rop guanine nucleotide exchange factor 1 [Source:GMGC_GENE;Acc:GSMUA_Achr2G09130_001]

Coordinates

chr2:+:12893940..12895851

Molecular Weight (calculated)

45036.1 Da

IEP (calculated)

5.846

GRAVY (calculated)

-0.402

Length

391 amino acids

Sequence
(BLAST)

001: MELMKEKFAK LLLGEDMSGG GTGVSSALAL SNAITNLAAS VFGEQRRLEP MPEERKARWR KEVDWLLSVS DHIVEFVPSQ QVSGDGKSME IMITQQRKDL
101: RMNIPALRKL DAMLIEYLDN FKQKNEFWYV SRDADESEKG NVQRTDDKWW LPTVRVPPGG LSEASRKWIQ HQKELVNQVL KAAMAINANV LMEMEIPEDY
201: IESLPKNGRS SLGETLYKNI TDEDFDAETF LASVDLSTEH KILDLKNRIE ASVVIWKRKM NNKDAKSTWG SAISSAISME KREQFEDRAE TILLILKHRF
301: PGIPQSALDI SKIQDNKDVG YSILESYSRI LESLAFTVMS RIEDVLHADS VTRDQKRERE KRCILQRFCT ISFLLYEDRR AFIIWIFFSL L

Best Arabidopsis Sequence Match ( AT1G79860.1 )
(BLAST)

001: MVRASEQEQE TYRSRLFNFK WRNNDNNSAT RHNKSLSVET GLDEAATGSH DAEPLTIIHP SQGPPLSRSA ADEAVLAALA ASQARERQLL ADMEQMKERF
101: SKLLLGEDNS GGGKGVSSAL ALSNAITNLA ASVFGEQRRL EPMPAERRAR WRKEIDWLLS VTDYVVEFAP SQQKNKDGTN MEIMTTRQRT DLHMNIPALK
201: KLDAMLIDCL ENFKDQSEFS YISKDSPDLD GKRNDEKWWI PTVKVPPDGL SEASRRFLQY QKDCVNQVLK AAMAINAQVL FEMEIPESYI DSLPKNGRAS
301: LGDQMYKNIT VDFFDPDQFL SSMDMSSEHK IVDLKNRIEA SIIIWKRKMV YKDNKSSAPW ASGVSLEKRE VFEERAETIL LILKQRYPGI SQSSLDISKI
401: QFNEDVGQAV LESYSRILES LAYTVLSRID DVLEADRAGN KRNTPLEAEE ETLVGSMTLS DFMGWDFDQA ANAELESKKD LPDDPLIKEK LSVVTTKKTS
501: YLETLGGVKS PTARH

Arabidopsis Description

ROPGEF12Rop guanine nucleotide exchange factor 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA89]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.