Factsheet for Solyc03g120650.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400006531	Potato	cytosol	98.01	98.01
Solyc06g066650.2.1	Tomato	nucleus	69.12	73.99
GSMUA_Achr5P06900_001	Banana	cytosol	59.76	71.26
Solyc12g044270.1.1	Tomato	nucleus	74.3	71.05
GSMUA_Achr6P14020_001	Banana	cytosol	59.56	69.37
GSMUA_Achr2P09130_001	Banana	cytosol	52.39	67.26
GSMUA_Achr4P10530_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	57.57	67.05
KRH44350	Soybean	nucleus	60.56	66.96
Solyc07g032730.2.1	Tomato	nucleus	54.18	66.5
OQU84790	Sorghum	cytosol	54.98	62.73
TraesCS6A01G196000.1	Wheat	cytosol	54.38	62.61
GSMUA_Achr3P03410_001	Banana	nucleus	62.55	62.06
KRH09881	Soybean	cytosol	64.74	60.98
KRH23439	Soybean	nucleus	64.74	60.86
GSMUA_Achr3P15410_001	Banana	nucleus	58.76	59.48
CDX67930	Canola	nucleus	57.57	59.34
Zm00001d053307_P002	Maize	cytosol, plastid	56.18	58.39
TraesCSU01G211800.1	Wheat	cytosol	37.45	57.67
AT1G79860.1	Thale cress	nucleus	58.96	57.48
Bra003536.1-P	Field mustard	nucleus	58.37	57.12
KRH47282	Soybean	nucleus	60.36	56.32
TraesCSU01G217800.1	Wheat	cytosol	37.85	55.88
TraesCSU01G211700.1	Wheat	cytosol	37.85	55.88
HORVU6Hr1G050860.4	Barley	mitochondrion	55.58	55.47
Os02t0272300-01	Rice	plasma membrane	56.37	55.17
Solyc12g007150.1.1	Tomato	nucleus	60.96	55.14
TraesCS6D01G183300.1	Wheat	mitochondrion	55.78	55.01
CDX79407	Canola	cytosol, endoplasmic reticulum, nucleus	58.37	54.56
Zm00001d016001_P002	Maize	mitochondrion	56.18	52.81
Solyc04g082110.2.1	Tomato	nucleus	33.86	37.69
Solyc01g094610.2.1	Tomato	nucleus	35.46	37.32
Solyc08g006550.2.1	Tomato	nucleus	38.45	36.42
Solyc01g111930.2.1	Tomato	nucleus	40.84	35.53
Solyc09g011480.2.1	Tomato	nucleus	41.04	35.03
Solyc08g075120.2.1	Tomato	extracellular	36.26	32.33
Solyc10g086660.1.1	Tomato	nucleus	40.64	30.04
Solyc12g096220.1.1	Tomato	nucleus	34.86	24.04

Protein Annotations

Gene3D:1.20.58.1310	Gene3D:1.20.58.2010	MapMan:27.4.3.1	EMBL:AY730762	GO:GO:0003674	GO:GO:0003824
GO:GO:0005085	GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0065009	InterPro:IPR005512
PFAM:PF03759	InterPro:PRONE_dom	PFscan:PS51334	PANTHER:PTHR33101	PANTHER:PTHR33101:SF10	UniProt:Q5DK69
InterPro:RopGEF	EnsemblPlantsGene:Solyc03g120650.2	EnsemblPlants:Solyc03g120650.2.1	UniParc:UPI00004E1B4B	SEG:seg	:

Description

Pollen-specific kinase partner protein [Source:UniProtKB/TrEMBL;Acc:Q5DK69]

Coordinates

chr3:-:68979083..68982244

Molecular Weight (calculated)

56696.3 Da

IEP (calculated)

5.046

GRAVY (calculated)

-0.623

Length

502 amino acids

Sequence
(BLAST)

001: MVRAVEEEKL EIPAVEPQNS NGWKLTRKET IKARNINKAD DSASAIVKEN SPPSDMELMK EKFAKLLLGE DMSGGGKGVS SALALSNAIT NLAASAFGEQ
101: KRLEPMQPET KAKWRKEIDW LLSVTDYIVE FVASKQKSKD GTIMEIMVTK QRTDLQMNIP ALRKLDTMLL DCLDSFKDQT EICYTSKDDE GKTARKDDKW
201: WIPTPKVPPN GLSDTTRKWL QFQKDSVNQV HKAALAINAQ VLTEMEVPEN YIESLPKNGR ASLGDSIYRS ITDEYFDPDY FLSTMDLSSE HKILDLKNRI
301: EASVVIWRRK MTAKDGKSTW SSAVSMEKRE LFEDRAETIL LILKHRFPGI PQSSLDISKI QYNRDIGQAI LESYSRIIES RAFTVMSRIE DVMQADDLAH
401: DPSNAEVKRF PMGDSLGVSD GMFNDKEEVE KLSSAETPNS MTLLDFMGWG EGDEDTEKDT KEEIRSKESD AKLLSKPPNI VTNKRVSYLE NLTGSRSPTA
501: RH

Best Arabidopsis Sequence Match ( AT1G79860.1 )
(BLAST)

001: MVRASEQEQE TYRSRLFNFK WRNNDNNSAT RHNKSLSVET GLDEAATGSH DAEPLTIIHP SQGPPLSRSA ADEAVLAALA ASQARERQLL ADMEQMKERF
101: SKLLLGEDNS GGGKGVSSAL ALSNAITNLA ASVFGEQRRL EPMPAERRAR WRKEIDWLLS VTDYVVEFAP SQQKNKDGTN MEIMTTRQRT DLHMNIPALK
201: KLDAMLIDCL ENFKDQSEFS YISKDSPDLD GKRNDEKWWI PTVKVPPDGL SEASRRFLQY QKDCVNQVLK AAMAINAQVL FEMEIPESYI DSLPKNGRAS
301: LGDQMYKNIT VDFFDPDQFL SSMDMSSEHK IVDLKNRIEA SIIIWKRKMV YKDNKSSAPW ASGVSLEKRE VFEERAETIL LILKQRYPGI SQSSLDISKI
401: QFNEDVGQAV LESYSRILES LAYTVLSRID DVLEADRAGN KRNTPLEAEE ETLVGSMTLS DFMGWDFDQA ANAELESKKD LPDDPLIKEK LSVVTTKKTS
501: YLETLGGVKS PTARH

Arabidopsis Description

ROPGEF12Rop guanine nucleotide exchange factor 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA89]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.