Factsheet for HORVU6Hr1G050860.4

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
TargetP:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G196000.1	Wheat	cytosol	85.29	98.39
TraesCSU01G211800.1	Wheat	cytosol	63.22	97.55
TraesCSU01G217800.1	Wheat	cytosol	64.21	95.0
TraesCSU01G211700.1	Wheat	cytosol	64.21	95.0
OQU84790	Sorghum	cytosol	79.72	91.14
TraesCS6D01G183300.1	Wheat	mitochondrion	90.26	89.19
Zm00001d053307_P002	Maize	cytosol, plastid	82.7	86.13
Os02t0272300-01	Rice	plasma membrane	85.69	84.02
Zm00001d016001_P002	Maize	mitochondrion	81.51	76.78
GSMUA_Achr6P14020_001	Banana	cytosol	58.05	67.75
Solyc07g032730.2.1	Tomato	nucleus	50.89	62.59
GSMUA_Achr3P03410_001	Banana	nucleus	62.03	61.66
Solyc06g066650.2.1	Tomato	nucleus	56.26	60.34
KRH44350	Soybean	nucleus	54.27	60.13
PGSC0003DMT400042632	Potato	nucleus	55.27	59.4
PGSC0003DMT400006531	Potato	cytosol	55.67	55.78
Solyc03g120650.2.1	Tomato	cytosol	55.47	55.58
HORVU3Hr1G073200.1	Barley	nucleus	51.89	54.83
Solyc12g044270.1.1	Tomato	nucleus	56.26	53.9
CDY44926	Canola	nucleus	52.29	53.24
Bra020048.1-P	Field mustard	nucleus	52.29	53.24
KRH23439	Soybean	nucleus	56.26	53.0
CDY42277	Canola	nucleus	51.89	52.83
KRH09881	Soybean	cytosol	55.86	52.72
PGSC0003DMT400040374	Potato	nucleus	48.71	52.13
Bra006510.1-P	Field mustard	cytosol	50.5	52.05
CDX88884	Canola	cytosol, plastid	50.5	52.05
AT5G19560.4	Thale cress	mitochondrion	52.88	51.95
CDY58963	Canola	cytosol	38.17	51.61
KRH47282	Soybean	nucleus	55.07	51.49
KRH39304	Soybean	nucleus	53.08	51.35
PGSC0003DMT400001020	Potato	nucleus	55.86	50.63
CDX70882	Canola	cytosol	50.7	50.49
CDX92519	Canola	plastid	49.7	50.3
Solyc12g007150.1.1	Tomato	nucleus	55.47	50.27
PGSC0003DMT400097197	Potato	nucleus	56.26	50.27
KRH48369	Soybean	mitochondrion	55.86	50.0
VIT_11s0016g03740.t01	Wine grape	nucleus	54.27	49.19
Bra002246.1-P	Field mustard	plastid	49.7	48.36
HORVU3Hr1G062030.1	Barley	nucleus, plastid	53.48	43.32
HORVU1Hr1G086590.2	Barley	plastid	51.29	38.28
HORVU1Hr1G053350.4	Barley	nucleus, plastid	35.19	37.03
HORVU6Hr1G092860.2	Barley	nucleus	33.2	36.54
HORVU5Hr1G085510.1	Barley	nucleus, plastid	40.16	35.69
HORVU1Hr1G072910.3	Barley	cytosol	36.78	32.8
HORVU2Hr1G096430.13	Barley	mitochondrion	33.8	32.02
HORVU3Hr1G085680.2	Barley	plastid	38.17	29.4
HORVU6Hr1G068660.4	Barley	nucleus	30.42	25.29
HORVU6Hr1G041610.18	Barley	plastid	30.42	20.4

Protein Annotations

EnsemblPlants:HORVU6Hr1G050860.4	EnsemblPlantsGene:HORVU6Hr1G050860	Gene3D:1.20.58.1310	Gene3D:1.20.58.2010	GO:GO:0003674	GO:GO:0005085
GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009	InterPro:IPR005512
InterPro:PRONE_dom	InterPro:RopGEF	PANTHER:PTHR33101	PANTHER:PTHR33101:SF16	PFAM:PF03759	PFscan:PS51334
SEG:seg	UniParc:UPI000B474016	UniProt:A0A287U5S3	MapMan:27.4.3.1	:	:

Description

No Description!

Coordinates

chrchr6H:+:308990373..308992212

Molecular Weight (calculated)

56251.4 Da

IEP (calculated)

7.621

GRAVY (calculated)

-0.460

Length

503 amino acids

Sequence
(BLAST)

001: WCGSSGGTAL TRATRTTTYG RRSKRATAVR KAARRCTSPV AMAAGGAPPI AFGLPRGXRS SMSHLDVMKE RFAKLLLGED MSGTGKGVSS ALALSNAITN
101: LAASVFGEHR KLEPMAPDTK ERWKKEVGWL LSVTDHIVEF VPTRQTAENG TTMEIMSTAQ RRDLQMNIPA LRKLDAMLIG YMDNFVDQTE FWYEKGGDNK
201: RDDDKWWMPT VKVPAEGLSD VTRKWLQYQK ECVNQVLKAA MAINAQVLVE MEIPEIYIES LPKKGKTSLG DAIYRSITDE EFDPIEFLEG VDLSTEHKVL
301: DLKNRIEAST IIWKRKMQTK DTKSSWGSII SFEKREQFEE RAETILHLLK LQFPGTPQSQ LDISKIQYNR DVGYALLESY SRVLESLAYS VMSRIEDVLG
401: ADAAATNLTA SEAARRQLEM NAPRKLDAKE ELEKLNEAPA SMTLYDFMGW HFDQDELMRK KEEGTLDEAG EAMLLKKAPS LAPKKFSYVD SLAGGVRSPS
501: ARH

Best Arabidopsis Sequence Match ( AT3G24620.1 )
(BLAST)

001: MVAALERGLS ASKSFNFKRM FDSSSTKQQQ SQTIVVENGD SHIVESNTPE SQNSDSFVES PVESSLPMIS PLTRPGKRSE RQQADMEMMK DRFAKLLLGE
101: DMSGGGKGVS SALALSNAIT NLAASIFGEQ TKLQPMPQDR QARWKKEIDW LLSVTDHIVE FVPSQQTSKD GVCTEIMVTR QRGDLLMNIP ALRKLDAMLI
201: DTLDNFRGHN EFWYVSRDSE EGQQARNDRT NDKWWLPPVK VPPGGLSEPS RRMLYFQKDS VTQVQKAAMA INAQVLSEME IPESYIDSLP KNGRASLGDS
301: IYKSITEEWF DPEQFLAMLD MSTEHKVLDL KNRIEASVVI WKRKLHTKDT KSSWGSAVSL EKRELFEERA ETILVLLKQK FPGLPQSSLD ISKIQFNKDV
401: GQAVLESYSR ILESLAYTVM SRIEDVLYTD TLALKQTLLA EETSDGGRTT ETDSESAGSS NSGEEAEKHD PHSKTLLDFM GWNDNSSKGG DKPTKSPNLT
501: PKKLSYLEKL ENLNGFRSPK DRH

Arabidopsis Description

ROPGEF8Rho guanine nucleotide exchange factor 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV40]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.